View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13270_high_2 (Length: 790)

Name: NF13270_high_2
Description: NF13270
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13270_high_2
NF13270_high_2
[»] chr5 (3 HSPs)
chr5 (37-770)||(27846079-27846812)
chr5 (15-51)||(14206530-14206566)
chr5 (15-51)||(40223680-40223716)
[»] chr7 (3 HSPs)
chr7 (15-51)||(7390669-7390705)
chr7 (15-59)||(40842547-40842591)
chr7 (15-58)||(19426720-19426763)
[»] chr6 (1 HSPs)
chr6 (15-51)||(25166765-25166801)
[»] chr4 (3 HSPs)
chr4 (15-51)||(48099950-48099986)
chr4 (15-51)||(51039012-51039048)
chr4 (15-51)||(51318841-51318877)
[»] chr2 (1 HSPs)
chr2 (15-51)||(7428568-7428604)
[»] chr1 (4 HSPs)
chr1 (15-51)||(5304725-5304761)
chr1 (15-53)||(5367934-5367972)
chr1 (14-51)||(45272052-45272089)
chr1 (14-51)||(49425875-49425912)
[»] chr8 (2 HSPs)
chr8 (15-53)||(32175096-32175134)
chr8 (15-53)||(34474091-34474129)
[»] chr3 (2 HSPs)
chr3 (15-53)||(36318173-36318211)
chr3 (15-53)||(46003847-46003885)


Alignment Details
Target: chr5 (Bit Score: 608; Significance: 0; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 608; E-Value: 0
Query Start/End: Original strand, 37 - 770
Target Start/End: Original strand, 27846079 - 27846812
Alignment:
Q  37 gttgtttaaatatcatttctcatgtatata--atatgaaaaataaaacatttacgatcacactcctacagaggatcccatatccaccttttcatctcaac 134  Q
    |||||| |||| ||||||||||| ||||||  |||| ||||||||||||||||||||| |||||||| |||||| |||||||||||||||||||||||||    
T  27846079 gttgttcaaatttcatttctcatatatatataatataaaaaataaaacatttacgatcccactcctatagaggaccccatatccaccttttcatctcaac 27846178  T
Q  135 aacaaaaataaccttgaaaaacaatatttaaagctttatctcccaagccatcgatccctaacaagatttatttactttttagcaagttcctattattagg 234  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |    
T  27846179 aacaaaaataaccttgaaaaacaatctttaaagctttatctcccaagccatcgatccctaacaagatttatttactttttagtaagttcctattattatg 27846278  T
Q  235 atgatgataaaa-tatcatgttttaatgtgttatccaactatgagtgcatattggtacaaaatcaactagatcttgaatttctaatacaaacatacatat 333  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27846279 atgatgataaaaatatcatgttttaatgtgttatccaactatgagtgcatattggtacaaaatcaactagatcttgaatttctaatacaaacatacatat 27846378  T
Q  334 atgatatgaaaaacaaaactgaaaagtaagtatgatgtggatggtgtattgaaatgagatagtcccattatagtgttagtggtggtgtttggtgcaaaaa 433  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27846379 atgatatgaaaa-caaaactgaaaagtaagtatgatgtggatggtgtattgaaatgagatagtcccattatagtgttagtggtggtgtttggtgcaaaaa 27846477  T
Q  434 ggaaagaaggggtccgggaagcaatcactatcaaaaactgttacttaatagtctcattctttcctttctggccggcgccgacagctttggttgaaggaat 533  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27846478 ggaaagaaggggtccgggaagcaatcactatcaaaaactgttacttaatagtctcattctttcctttctggccggcgccgacagctttggttgaaggaat 27846577  T
Q  534 caaaacgatacagatggccatgaccatgatatgctgtgctgctcacccgacaacctcttttgcttcttggatcacttgctctgcctgcactatcgtcttg 633  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27846578 caaaacgatacagatggccatgaccatgatatgctgtgctgctcacccgacaacctcttttgcttcttggatcacttgctctgcctgcactatcgtcttg 27846677  T
Q  634 tcttgctttcatacaaaacaaactccatctcnnnnnnnnctcctaataatccatttccatcttccnnnnnnnccatcacaatcacgatattttgttgaga 733  Q
    |||||||||||||||||||||||||||||||        ||||||||||||||||||||||||||       ||||||||||||| ||||||||| ||||    
T  27846678 tcttgctttcatacaaaacaaactccatctc--ttttttctcctaataatccatttccatcttccaaaaaaaccatcacaatcactatattttgtagaga 27846775  T
Q  734 atctcgctaacgaatgtcttaaagattatgtcctaaa 770  Q
    ||||||||||||||||| |||||||||||||||||||    
T  27846776 atctcgctaacgaatgttttaaagattatgtcctaaa 27846812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 15 - 51
Target Start/End: Original strand, 14206530 - 14206566
Alignment:
Q  15 tcaccaaaaattgtatgaaatggttgtttaaatatca 51  Q
    |||||||||||||||||||||||||||| ||||||||    
T  14206530 tcaccaaaaattgtatgaaatggttgttcaaatatca 14206566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 15 - 51
Target Start/End: Complemental strand, 40223716 - 40223680
Alignment:
Q  15 tcaccaaaaattgtatgaaatggttgtttaaatatca 51  Q
    |||||||||||||||||||||||||||| ||||||||    
T  40223716 tcaccaaaaattgtatgaaatggttgttcaaatatca 40223680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000005; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 15 - 51
Target Start/End: Complemental strand, 7390705 - 7390669
Alignment:
Q  15 tcaccaaaaattgtatgaaatggttgtttaaatatca 51  Q
    |||||||||||||||||||||||||||| ||||||||    
T  7390705 tcaccaaaaattgtatgaaatggttgttcaaatatca 7390669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 15 - 59
Target Start/End: Original strand, 40842547 - 40842591
Alignment:
Q  15 tcaccaaaaattgtatgaaatggttgtttaaatatcatttctcat 59  Q
    ||||||||| |||||||||||||||||| |||||||||| |||||    
T  40842547 tcaccaaaagttgtatgaaatggttgttcaaatatcattactcat 40842591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 58
Target Start/End: Original strand, 19426720 - 19426763
Alignment:
Q  15 tcaccaaaaattgtatgaaatggttgtttaaatatcatttctca 58  Q
    ||||||||| |||||||||||||||||| |||||||| ||||||    
T  19426720 tcaccaaaagttgtatgaaatggttgttcaaatatcacttctca 19426763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 15 - 51
Target Start/End: Original strand, 25166765 - 25166801
Alignment:
Q  15 tcaccaaaaattgtatgaaatggttgtttaaatatca 51  Q
    |||| ||||||||||||||||||||||||||||||||    
T  25166765 tcacaaaaaattgtatgaaatggttgtttaaatatca 25166801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000005; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 15 - 51
Target Start/End: Original strand, 48099950 - 48099986
Alignment:
Q  15 tcaccaaaaattgtatgaaatggttgtttaaatatca 51  Q
    ||||||||| |||||||||||||||||||||||||||    
T  48099950 tcaccaaaagttgtatgaaatggttgtttaaatatca 48099986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 15 - 51
Target Start/End: Complemental strand, 51039048 - 51039012
Alignment:
Q  15 tcaccaaaaattgtatgaaatggttgtttaaatatca 51  Q
    ||||||||| |||||||||||||||||||||||||||    
T  51039048 tcaccaaaagttgtatgaaatggttgtttaaatatca 51039012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 15 - 51
Target Start/End: Original strand, 51318841 - 51318877
Alignment:
Q  15 tcaccaaaaattgtatgaaatggttgtttaaatatca 51  Q
    |||||||||||| ||||||||||||||||||||||||    
T  51318841 tcaccaaaaattatatgaaatggttgtttaaatatca 51318877  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 15 - 51
Target Start/End: Original strand, 7428568 - 7428604
Alignment:
Q  15 tcaccaaaaattgtatgaaatggttgtttaaatatca 51  Q
    |||||||||||||||||||||||||||| ||||||||    
T  7428568 tcaccaaaaattgtatgaaatggttgttcaaatatca 7428604  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000005; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 15 - 51
Target Start/End: Complemental strand, 5304761 - 5304725
Alignment:
Q  15 tcaccaaaaattgtatgaaatggttgtttaaatatca 51  Q
    |||||||||||||||||||||||||||| ||||||||    
T  5304761 tcaccaaaaattgtatgaaatggttgttcaaatatca 5304725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 15 - 53
Target Start/End: Complemental strand, 5367972 - 5367934
Alignment:
Q  15 tcaccaaaaattgtatgaaatggttgtttaaatatcatt 53  Q
    ||||||||||||||||||||||| |||| ||||||||||    
T  5367972 tcaccaaaaattgtatgaaatggatgttcaaatatcatt 5367934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 51
Target Start/End: Complemental strand, 45272089 - 45272052
Alignment:
Q  14 atcaccaaaaattgtatgaaatggttgtttaaatatca 51  Q
    |||||||||| |||||||||||||||||| ||||||||    
T  45272089 atcaccaaaagttgtatgaaatggttgttcaaatatca 45272052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 51
Target Start/End: Original strand, 49425875 - 49425912
Alignment:
Q  14 atcaccaaaaattgtatgaaatggttgtttaaatatca 51  Q
    |||||||||| |||||||||||||||||| ||||||||    
T  49425875 atcaccaaaagttgtatgaaatggttgttcaaatatca 49425912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000007; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 15 - 53
Target Start/End: Original strand, 32175096 - 32175134
Alignment:
Q  15 tcaccaaaaattgtatgaaatggttgtttaaatatcatt 53  Q
    ||||||||| |||||||||||||||||| ||||||||||    
T  32175096 tcaccaaaagttgtatgaaatggttgttcaaatatcatt 32175134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 15 - 53
Target Start/End: Original strand, 34474091 - 34474129
Alignment:
Q  15 tcaccaaaaattgtatgaaatggttgtttaaatatcatt 53  Q
    ||||||||| |||||||||||||||||| ||||||||||    
T  34474091 tcaccaaaagttgtatgaaatggttgttcaaatatcatt 34474129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000007; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 15 - 53
Target Start/End: Complemental strand, 36318211 - 36318173
Alignment:
Q  15 tcaccaaaaattgtatgaaatggttgtttaaatatcatt 53  Q
    |||||||||||| ||||||||||||||| ||||||||||    
T  36318211 tcaccaaaaattatatgaaatggttgttcaaatatcatt 36318173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 15 - 53
Target Start/End: Original strand, 46003847 - 46003885
Alignment:
Q  15 tcaccaaaaattgtatgaaatggttgtttaaatatcatt 53  Q
    ||||||||| |||||||||||||||||| ||||||||||    
T  46003847 tcaccaaaagttgtatgaaatggttgttcaaatatcatt 46003885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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