View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13270_high_3 (Length: 763)

Name: NF13270_high_3
Description: NF13270
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13270_high_3
NF13270_high_3
[»] chr3 (26 HSPs)
chr3 (19-461)||(34898023-34898469)
chr3 (613-759)||(34897794-34897940)
chr3 (510-635)||(1995448-1995573)
chr3 (550-624)||(52859272-52859346)
chr3 (510-579)||(2229987-2230056)
chr3 (510-579)||(19830433-19830502)
chr3 (510-579)||(43719949-43720018)
chr3 (510-618)||(27033655-27033763)
chr3 (510-620)||(10474400-10474509)
chr3 (510-580)||(29586340-29586410)
chr3 (510-579)||(34373835-34373904)
chr3 (510-581)||(33632827-33632897)
chr3 (510-573)||(34373593-34373656)
chr3 (514-617)||(44637950-44638052)
chr3 (510-581)||(54911658-54911729)
chr3 (522-618)||(24754673-24754769)
chr3 (522-618)||(24763670-24763766)
chr3 (510-625)||(48084823-48084939)
chr3 (510-581)||(31523668-31523739)
chr3 (510-579)||(46167397-46167466)
chr3 (511-575)||(25285843-25285907)
chr3 (510-618)||(51982549-51982656)
chr3 (510-581)||(42613084-42613155)
chr3 (510-581)||(49679270-49679341)
chr3 (513-579)||(40851781-40851847)
chr3 (551-620)||(30235416-30235484)
[»] chr6 (20 HSPs)
chr6 (510-626)||(7215807-7215923)
chr6 (510-626)||(2800566-2800682)
chr6 (510-627)||(4804452-4804569)
chr6 (510-576)||(27826542-27826608)
chr6 (510-579)||(21159371-21159440)
chr6 (510-618)||(7162088-7162196)
chr6 (510-579)||(12412641-12412710)
chr6 (510-579)||(13089751-13089820)
chr6 (510-579)||(17944166-17944235)
chr6 (510-618)||(17828532-17828639)
chr6 (510-581)||(24484883-24484954)
chr6 (522-616)||(23936269-23936365)
chr6 (510-581)||(32254031-32254102)
chr6 (510-579)||(1249150-1249217)
chr6 (583-625)||(9952993-9953035)
chr6 (510-618)||(227526-227635)
chr6 (510-559)||(29698167-29698216)
chr6 (510-581)||(13888522-13888594)
chr6 (510-581)||(2142293-2142364)
chr6 (537-575)||(9954332-9954370)
[»] chr1 (19 HSPs)
chr1 (510-626)||(39426214-39426330)
chr1 (510-627)||(32887735-32887851)
chr1 (510-622)||(26860010-26860121)
chr1 (538-624)||(35534741-35534825)
chr1 (510-618)||(26372256-26372362)
chr1 (510-579)||(12151771-12151840)
chr1 (510-618)||(50294026-50294134)
chr1 (510-581)||(5047381-5047452)
chr1 (522-579)||(7840681-7840738)
chr1 (510-618)||(32618805-32618911)
chr1 (510-579)||(50484390-50484459)
chr1 (510-625)||(18976260-18976376)
chr1 (514-581)||(24977248-24977315)
chr1 (510-581)||(30077644-30077715)
chr1 (510-572)||(24413291-24413353)
chr1 (510-579)||(48327156-48327224)
chr1 (510-581)||(52280039-52280110)
chr1 (510-567)||(12380924-12380981)
chr1 (510-567)||(12384991-12385048)
[»] chr2 (26 HSPs)
chr2 (511-624)||(30709115-30709228)
chr2 (510-625)||(4446852-4446967)
chr2 (510-627)||(19908784-19908899)
chr2 (550-625)||(30217517-30217592)
chr2 (510-626)||(31618724-31618838)
chr2 (510-579)||(13238685-13238754)
chr2 (510-575)||(28564896-28564961)
chr2 (510-579)||(35316829-35316898)
chr2 (510-581)||(15709772-15709843)
chr2 (510-622)||(30857638-30857749)
chr2 (510-581)||(8988859-8988930)
chr2 (510-581)||(21454495-21454565)
chr2 (556-626)||(30721564-30721632)
chr2 (510-581)||(35315288-35315359)
chr2 (510-581)||(36929720-36929791)
chr2 (510-581)||(38397085-38397156)
chr2 (512-625)||(2063359-2063472)
chr2 (511-581)||(34512025-34512095)
chr2 (510-579)||(23259489-23259558)
chr2 (510-581)||(374997-375068)
chr2 (442-484)||(6946245-6946287)
chr2 (514-581)||(19905889-19905956)
chr2 (510-581)||(23459846-23459917)
chr2 (510-576)||(4603114-4603180)
chr2 (511-581)||(15722239-15722309)
chr2 (552-618)||(22061433-22061498)
[»] chr8 (20 HSPs)
chr8 (510-624)||(42761717-42761831)
chr8 (510-579)||(30426671-30426740)
chr8 (510-627)||(21360280-21360400)
chr8 (510-579)||(28069723-28069792)
chr8 (510-579)||(36991360-36991429)
chr8 (510-581)||(18689495-18689566)
chr8 (510-581)||(24557181-24557252)
chr8 (510-581)||(26749548-26749619)
chr8 (510-581)||(36748492-36748562)
chr8 (510-620)||(42338008-42338117)
chr8 (510-618)||(6014198-6014307)
chr8 (510-574)||(10672519-10672583)
chr8 (527-581)||(17520403-17520457)
chr8 (514-579)||(40695249-40695314)
chr8 (510-581)||(34612568-34612639)
chr8 (510-579)||(10652619-10652688)
chr8 (510-575)||(24102020-24102085)
chr8 (510-559)||(28318924-28318973)
chr8 (510-579)||(41511266-41511335)
chr8 (510-559)||(44859189-44859238)
[»] chr5 (26 HSPs)
chr5 (510-618)||(29340999-29341106)
chr5 (510-579)||(4895737-4895806)
chr5 (510-579)||(35660611-35660680)
chr5 (510-579)||(14349807-14349876)
chr5 (510-579)||(18625423-18625492)
chr5 (510-579)||(32129619-32129688)
chr5 (510-579)||(37266735-37266804)
chr5 (510-618)||(11775797-11775905)
chr5 (511-618)||(43309113-43309220)
chr5 (510-579)||(40753164-40753233)
chr5 (510-581)||(31653039-31653110)
chr5 (510-579)||(13032122-13032191)
chr5 (510-579)||(34827196-34827265)
chr5 (510-581)||(2984390-2984461)
chr5 (510-577)||(10362018-10362085)
chr5 (510-581)||(36290606-36290677)
chr5 (510-616)||(39902419-39902525)
chr5 (514-575)||(14688582-14688643)
chr5 (513-581)||(27428881-27428949)
chr5 (510-581)||(3057154-3057225)
chr5 (530-581)||(18653385-18653436)
chr5 (510-581)||(31279918-31279989)
chr5 (510-573)||(43222130-43222193)
chr5 (510-564)||(4592804-4592858)
chr5 (554-620)||(9460597-9460662)
chr5 (591-625)||(21213953-21213987)
[»] chr7 (27 HSPs)
chr7 (510-618)||(4888471-4888579)
chr7 (25-179)||(46115347-46115506)
chr7 (510-579)||(25084730-25084799)
chr7 (536-625)||(47270580-47270668)
chr7 (510-579)||(12139330-12139400)
chr7 (510-579)||(9559056-9559125)
chr7 (510-623)||(40023215-40023327)
chr7 (510-581)||(32915960-32916031)
chr7 (510-581)||(39855813-39855884)
chr7 (510-581)||(47799900-47799971)
chr7 (510-626)||(33450510-33450627)
chr7 (510-618)||(7712331-7712438)
chr7 (531-587)||(29844316-29844372)
chr7 (510-581)||(989133-989204)
chr7 (511-625)||(7373872-7373985)
chr7 (510-579)||(7362572-7362641)
chr7 (510-579)||(21151156-21151225)
chr7 (510-579)||(45260429-45260498)
chr7 (510-618)||(16366522-16366630)
chr7 (510-581)||(47500282-47500354)
chr7 (510-581)||(8149613-8149684)
chr7 (510-581)||(24193597-24193668)
chr7 (510-573)||(29631052-29631115)
chr7 (526-618)||(44647984-44648076)
chr7 (510-573)||(30588539-30588602)
chr7 (522-581)||(46802331-46802390)
chr7 (510-579)||(18198260-18198329)
[»] chr4 (32 HSPs)
chr4 (510-618)||(19901881-19901989)
chr4 (513-618)||(23610649-23610754)
chr4 (510-618)||(5416429-5416536)
chr4 (510-579)||(5763164-5763233)
chr4 (522-623)||(36532641-36532741)
chr4 (510-579)||(56558283-56558352)
chr4 (510-622)||(1871281-1871392)
chr4 (510-625)||(56453777-56453891)
chr4 (555-626)||(15178628-15178699)
chr4 (510-581)||(56269076-56269147)
chr4 (510-579)||(3952172-3952241)
chr4 (510-579)||(24073620-24073689)
chr4 (510-575)||(34778425-34778490)
chr4 (531-617)||(5815267-5815350)
chr4 (510-581)||(23474115-23474186)
chr4 (510-621)||(42844148-42844258)
chr4 (510-581)||(48914518-48914589)
chr4 (510-576)||(18207045-18207111)
chr4 (510-575)||(30567905-30567970)
chr4 (510-581)||(5524451-5524522)
chr4 (510-581)||(36688188-36688259)
chr4 (510-581)||(50483556-50483627)
chr4 (510-576)||(13493276-13493342)
chr4 (510-576)||(33262557-33262623)
chr4 (510-579)||(33247132-33247201)
chr4 (555-620)||(33841766-33841830)
chr4 (523-623)||(47922324-47922425)
chr4 (510-546)||(46804635-46804671)
chr4 (510-581)||(1015854-1015925)
chr4 (510-548)||(12241441-12241479)
chr4 (510-579)||(12312477-12312547)
chr4 (510-576)||(38079725-38079791)
[»] scaffold0250 (1 HSPs)
scaffold0250 (510-579)||(7151-7220)
[»] scaffold0121 (1 HSPs)
scaffold0121 (510-581)||(29569-29640)
[»] scaffold0062 (2 HSPs)
scaffold0062 (510-581)||(58684-58755)
scaffold0062 (511-581)||(70796-70866)
[»] scaffold0035 (1 HSPs)
scaffold0035 (510-579)||(16399-16468)
[»] scaffold0012 (1 HSPs)
scaffold0012 (510-579)||(208067-208136)
[»] scaffold0008 (1 HSPs)
scaffold0008 (510-579)||(9203-9272)
[»] scaffold0171 (1 HSPs)
scaffold0171 (510-576)||(17311-17377)
[»] scaffold0126 (1 HSPs)
scaffold0126 (510-573)||(22450-22513)


Alignment Details
Target: chr3 (Bit Score: 406; Significance: 0; HSPs: 26)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 19 - 461
Target Start/End: Complemental strand, 34898469 - 34898023
Alignment:
Q  19 cctcatatgttggcttggcatacttcttggtgcactttcagtatctttagagtttgaaactgtcgttctaagaaatttttgttgccggtcttaaacatgg 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34898469 cctcatatgttggcttggcatacttcttggtgcactttcagtatctttagagtttgaaactgtcgttctaagaaatttttgttgccggtcttaaacatgg 34898370  T
Q  119 cagtgaatggtgtgaagtaaatagttttgtttttctataaatttctaagaaaaatacaaatcaacagtccaaaatacaaccaaacctatctaagcata-- 216  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||      
T  34898369 cagtgaatggtgtgaagtaaatagttttgtttttctttaaatttctaagaaaaatacaaatcaaccgtccaaaatacaaccaaacctatctaagcatata 34898270  T
Q  217 --caatcaaatggatatgtaaaccattcatacaataggcaaaagggatcatttacatcaaatatatttgttcttggtcaaatgcttaatccgcatgatat 314  Q
      ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  34898269 tacaatcaaatggatatgtaaaccattcatacaataggcaaaagggatcatttacatcaaatatatttgttcttggtcaaatgctcaatccgcatgatat 34898170  T
Q  315 tccttcgtttacaacgtaagatccagtgagtcgtcaaactcaatattatacatcttacgtctatataagggacatgttactaccaatcaagatatgttca 414  Q
    |||||||||||||||||||||| ||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34898169 tccttcgtttacaacgtaagattcagtgagtcatcaaactcaatactatacatcttacgtctatataagggacatgttactaccaatcaagatatgttca 34898070  T
Q  415 ttcattcactcaatacctcccactcgagtcaagatcttctccatttt 461  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  34898069 ttcattcactcaatacctcccactcgagtcaagatcttctccatttt 34898023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 135; E-Value: 6e-70
Query Start/End: Original strand, 613 - 759
Target Start/End: Complemental strand, 34897940 - 34897794
Alignment:
Q  613 aggatcctaacccctctcacccacctctattacatgttgacttggattccaacaaattctccaaaaacaaaacagtttttacaatgatattttctatttg 712  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  34897940 aggatcctaacccctctcacccacctcaattacatgttgacttggattccgacaaattctccaaaaacaaaacagtttttacaatgatattttctatttg 34897841  T
Q  713 tatcaaaattatagttctaccgaacaaaacggtattgatgatgtcca 759  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||    
T  34897840 tatcaaaattatagttctaccgaacaaaacggtattgaagatgtcca 34897794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 510 - 635
Target Start/End: Original strand, 1995448 - 1995573
Alignment:
Q  510 taattaatgatagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaatcgtgtacttccatttattttatcaaatg 609  Q
    ||||||||||| ||| ||| |||||| ||||||||| ||||||||||||| | ||||||||||||| ||||| |||||||||||||||||| || |||||    
T  1995448 taattaatgatggtgagactcacttattggtaggactcattatctattttctatgtctatctctcttcaaattgtgtacttccatttatttgataaaatg 1995547  T
Q  610 aagaggatcctaacccctctcaccca 635  Q
    |||||||||||||||| | |||||||    
T  1995548 aagaggatcctaacccatgtcaccca 1995573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 550 - 624
Target Start/End: Original strand, 52859272 - 52859346
Alignment:
Q  550 tatctattttatgtgtctatctctctccaaatcgtgtacttccatttattttatcaaatgaagaggatcctaacc 624  Q
    ||||||||||||||||||||||||||| |||| ||||| || |||||||||||||||||| |||||||| |||||    
T  52859272 tatctattttatgtgtctatctctctctaaattgtgtattttcatttattttatcaaatggagaggatcataacc 52859346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 510 - 579
Target Start/End: Original strand, 2229987 - 2230056
Alignment:
Q  510 taattaatgatagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaa 579  Q
    ||||||||||| |||| | ||||||| ||||||||||||| ||||||||| |||||||||||||||||||    
T  2229987 taattaatgatggtggaaaccacttagtggtaggacccatcatctattttttgtgtctatctctctccaa 2230056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 510 - 579
Target Start/End: Complemental strand, 19830502 - 19830433
Alignment:
Q  510 taattaatgatagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaa 579  Q
    ||||||||||| |||||||||||||||||||||||||||  ||||||||| ||||||||| |||| ||||    
T  19830502 taattaatgatggtgggacccacttaatggtaggacccaccatctattttttgtgtctatttctccccaa 19830433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 510 - 579
Target Start/End: Complemental strand, 43720018 - 43719949
Alignment:
Q  510 taattaatgatagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaa 579  Q
    ||||||||||| |||||||||||||| ||||||||||||  || |||||| |||||||||||||||||||    
T  43720018 taattaatgatggtgggacccacttagtggtaggacccacaatttattttttgtgtctatctctctccaa 43719949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 510 - 618
Target Start/End: Original strand, 27033655 - 27033763
Alignment:
Q  510 taattaatgatagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaatcgtgtacttccatttattttatcaaatg 609  Q
    ||||||||||| |||||| ||||||| ||||||||||||  ||||||||  ||||||||||||||||||| | |   |  ||||||||||||||||||||    
T  27033655 taattaatgatggtgggatccacttagtggtaggacccaccatctatttcttgtgtctatctctctccaacttgcaaaactccatttattttatcaaatg 27033754  T
Q  610 aagaggatc 618  Q
     ||| ||||    
T  27033755 gagatgatc 27033763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 510 - 620
Target Start/End: Complemental strand, 10474509 - 10474400
Alignment:
Q  510 taattaatgatagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaatcgtgtacttccatttattttatcaaatg 609  Q
    ||||||||| | |||| || |||||||| |||||| |||||||||||||||||||||||| |||||| |||| |  ||| |||||||||| | ||||||     
T  10474509 taattaatgttggtggaactcacttaatagtaggatccattatctattttatgtgtctatatctctcaaaattgcatac-tccatttattatgtcaaata 10474411  T
Q  610 aagaggatcct 620  Q
     ||||||||||    
T  10474410 gagaggatcct 10474400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 510 - 580
Target Start/End: Original strand, 29586340 - 29586410
Alignment:
Q  510 taattaatgatagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaa 580  Q
    ||||||||||| ||| |||||||||||| ||| |||  | |||||||||||||||||||||||||||||||    
T  29586340 taattaatgatggtgagacccacttaatagtaagacttactatctattttatgtgtctatctctctccaaa 29586410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 510 - 579
Target Start/End: Original strand, 34373835 - 34373904
Alignment:
Q  510 taattaatgatagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaa 579  Q
    ||||||||||| |||||||| | ||| ||||||||||||  ||||||||| |||||||||||||||||||    
T  34373835 taattaatgatggtgggacctaattagtggtaggacccaccatctattttttgtgtctatctctctccaa 34373904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 510 - 581
Target Start/End: Original strand, 33632827 - 33632897
Alignment:
Q  510 taattaatgatagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaat 581  Q
    ||||||||||| |||| | ||| ||||| |||||| ||| ||||||||||||||||||||||||||||||||    
T  33632827 taattaatgat-gtggaatccatttaatagtaggatccactatctattttatgtgtctatctctctccaaat 33632897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 510 - 573
Target Start/End: Complemental strand, 34373656 - 34373593
Alignment:
Q  510 taattaatgatagtgggacccacttaatggtaggacccattatctattttatgtgtctatctct 573  Q
    ||||||||||| |||||||||||||| ||||||||||||  |||||||||  ||||||||||||    
T  34373656 taattaatgatggtgggacccacttagtggtaggacccaccatctatttttagtgtctatctct 34373593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 514 - 617
Target Start/End: Original strand, 44637950 - 44638052
Alignment:
Q  514 taatgatagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaatcgtgtacttccatttattttatcaaatgaaga 613  Q
    |||||| ||| ||||| ||||||| |||||  ||| |||||||||||||||| |||||||||| |||| |  ||| |||||||||||| |||||||| ||    
T  44637950 taatgacagtaggacctacttaatagtagggtccactatctattttatgtgtttatctctctcaaaattgcatac-tccatttattttgtcaaatgatga 44638048  T
Q  614 ggat 617  Q
    ||||    
T  44638049 ggat 44638052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 510 - 581
Target Start/End: Original strand, 54911658 - 54911729
Alignment:
Q  510 taattaatgatagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaat 581  Q
    ||||||||||| |||| || || |||||||||||||||| || ||||||||||| ||||||||||| |||||    
T  54911658 taattaatgatggtggaactcatttaatggtaggacccactacctattttatgtctctatctctcttcaaat 54911729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 522 - 618
Target Start/End: Original strand, 24754673 - 24754769
Alignment:
Q  522 gtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaatcgtgtacttccatttattttatcaaatgaagaggatc 618  Q
    |||||||||||||| |||||||||  |  ||||||||| ||||||||||||||||||| | ||  |  ||||||||||||  |||||| ||||||||    
T  24754673 gtgggacccacttagtggtaggacataccatctattttgtgtgtctatctctctccaacttgtaaaactccatttattttgccaaatggagaggatc 24754769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 522 - 618
Target Start/End: Original strand, 24763670 - 24763766
Alignment:
Q  522 gtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaatcgtgtacttccatttattttatcaaatgaagaggatc 618  Q
    |||||||||||||| |||||||||  |  ||||||||| ||||||||||||||||||| | ||  |  ||||||||||||  |||||| ||||||||    
T  24763670 gtgggacccacttagtggtaggacataccatctattttgtgtgtctatctctctccaacttgtaaaactccatttattttgccaaatggagaggatc 24763766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 510 - 625
Target Start/End: Original strand, 48084823 - 48084939
Alignment:
Q  510 taattaatgatagtgggacccacttaatggtaggacccattatctatt-ttatgtgtctatctctctccaaatcgtgtacttccatttattttatcaaat 608  Q
    |||||||||||  ||||||||||||| |||| |||||||  ||||||| || |||||||||||||| |||||| |   |  || |||||||||| |||||    
T  48084823 taattaatgatgatgggacccacttagtggttggacccaccatctattcttttgtgtctatctctccccaaattgcaaaactcaatttattttagcaaat 48084922  T
Q  609 gaagaggatcctaaccc 625  Q
    | |||||||| ||||||    
T  48084923 ggagaggatcttaaccc 48084939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 510 - 581
Target Start/End: Complemental strand, 31523739 - 31523668
Alignment:
Q  510 taattaatgatagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaat 581  Q
    ||||||||||| |||||||||||||| |  |||||||||  |  |||||| |||||||||||||||||||||    
T  31523739 taattaatgatggtgggacccacttagtaataggacccaccacttattttttgtgtctatctctctccaaat 31523668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 510 - 579
Target Start/End: Original strand, 46167397 - 46167466
Alignment:
Q  510 taattaatgatagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaa 579  Q
    |||||||| || || ||| ||||||| ||||||||||||  || |||||| |||||||||||||||||||    
T  46167397 taattaataatggtaggatccacttagtggtaggacccaccatatattttttgtgtctatctctctccaa 46167466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 511 - 575
Target Start/End: Complemental strand, 25285907 - 25285843
Alignment:
Q  511 aattaatgatagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctct 575  Q
    |||| ||||| ||||| | || |||||| ||||| ||| ||||||||||||||||||||||||||    
T  25285907 aattgatgatggtgggtctcatttaatgataggatccactatctattttatgtgtctatctctct 25285843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 510 - 618
Target Start/End: Complemental strand, 51982656 - 51982549
Alignment:
Q  510 taattaatgatagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaatcgtgtacttccatttattttatcaaatg 609  Q
    |||||||||||  | | || ||||||||| ||| ||||| || ||||||||||| ||||||||||||||||| |  | ||||||||||||||   |||||    
T  51982656 taattaatgatgatagaactcacttaatgatagaacccactaactattttatgtatctatctctctccaaattgcat-cttccatttatttttataaatg 51982558  T
Q  610 aagaggatc 618  Q
     ||||||||    
T  51982557 gagaggatc 51982549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 510 - 581
Target Start/End: Original strand, 42613084 - 42613155
Alignment:
Q  510 taattaatgatagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaat 581  Q
    ||||||||||| |||||||||||||| || |||||||||  |  |||||| | ||||||||||||| |||||    
T  42613084 taattaatgatggtgggacccacttagtgataggacccaccacttattttttttgtctatctctcttcaaat 42613155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 510 - 581
Target Start/End: Complemental strand, 49679341 - 49679270
Alignment:
Q  510 taattaatgatagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaat 581  Q
    ||||||||||| |||||||||| ||| || ||||||||   |  |||||| |||||||||||||||||||||    
T  49679341 taattaatgatggtgggacccatttagtgataggacccgccacttattttttgtgtctatctctctccaaat 49679270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 513 - 579
Target Start/End: Original strand, 40851781 - 40851847
Alignment:
Q  513 ttaatgatagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaa 579  Q
    |||||||| || ||||||||||| |||| | |||||  ||||||||| ||||||||||| |||||||    
T  40851781 ttaatgatggtaggacccacttagtggttgaacccaccatctattttttgtgtctatctttctccaa 40851847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 551 - 620
Target Start/End: Complemental strand, 30235484 - 30235416
Alignment:
Q  551 atctattttatgtgtctatctctctccaaatcgtgtacttccatttattttatcaaatgaagaggatcct 620  Q
    ||||||||| | ||||||||||||| ||||| |  |||| |||||||||||| |||||||||| ||||||    
T  30235484 atctattttttatgtctatctctcttcaaattgcatact-ccatttattttaacaaatgaagatgatcct 30235416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 89; Significance: 2e-42; HSPs: 20)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 510 - 626
Target Start/End: Complemental strand, 7215923 - 7215807
Alignment:
Q  510 taattaatgatagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaatcgtgtacttccatttattttatcaaatg 609  Q
    |||||||||||||||||||||| ||| |||||||||||| |||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||    
T  7215923 taattaatgatagtgggacccaattagtggtaggacccactatctattttatgtgtctatctctctccaaattgtgcacttccatttattttatcaaatg 7215824  T
Q  610 aagaggatcctaacccc 626  Q
     ||||||| ||||||||    
T  7215823 gagaggatactaacccc 7215807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 510 - 626
Target Start/End: Complemental strand, 2800682 - 2800566
Alignment:
Q  510 taattaatgatagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaatcgtgtacttccatttattttatcaaatg 609  Q
    |||| |||||| |||||||||||||||||||| || ||| |||||||||||||||||||||||||||||||| ||||| ||||||| |||||||||||||    
T  2800682 taatcaatgatggtgggacccacttaatggtatgatccactatctattttatgtgtctatctctctccaaattgtgtatttccattaattttatcaaatg 2800583  T
Q  610 aagaggatcctaacccc 626  Q
     ||||||||||||||||    
T  2800582 gagaggatcctaacccc 2800566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 510 - 627
Target Start/End: Original strand, 4804452 - 4804569
Alignment:
Q  510 taattaatgatagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaatcgtgtacttccatttattttatcaaatg 609  Q
    ||||||||||| |||||||||||||| ||||||||||||  ||||||||| ||||||||||||||||||| | ||  |  ||||||||||||  ||||||    
T  4804452 taattaatgatggtgggacccacttagtggtaggacccaccatctattttttgtgtctatctctctccaacttgtaaaactccatttattttgccaaatg 4804551  T
Q  610 aagaggatcctaacccct 627  Q
     |||||||| | ||||||    
T  4804552 gagaggatcttcacccct 4804569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 510 - 576
Target Start/End: Original strand, 27826542 - 27826608
Alignment:
Q  510 taattaatgatagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctc 576  Q
    ||||||||||| |||||||||||||| ||||||||||||  ||||||||| ||||||||||||||||    
T  27826542 taattaatgatggtgggacccacttagtggtaggacccaccatctattttttgtgtctatctctctc 27826608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 510 - 579
Target Start/End: Complemental strand, 21159440 - 21159371
Alignment:
Q  510 taattaatgatagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaa 579  Q
    ||||||||||| |||||||||||||| ||||||||||||  ||||||||| ||||||||| |||||||||    
T  21159440 taattaatgatggtgggacccacttagtggtaggacccaccatctattttttgtgtctatttctctccaa 21159371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 510 - 618
Target Start/End: Original strand, 7162088 - 7162196
Alignment:
Q  510 taattaatgatagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaatcgtgtacttccatttattttatcaaatg 609  Q
    ||||||||||| |||||||||||||| | ||||||||||  ||||||||  ||||||||||||||||||| | |   |  ||||||||||||||||||||    
T  7162088 taattaatgatggtgggacccacttagtagtaggacccaccatctatttcttgtgtctatctctctccaacttgcaaaactccatttattttatcaaatg 7162187  T
Q  610 aagaggatc 618  Q
     ||| ||||    
T  7162188 gagatgatc 7162196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 510 - 579
Target Start/End: Original strand, 12412641 - 12412710
Alignment:
Q  510 taattaatgatagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaa 579  Q
    ||||||||||| |||| ||||||||| ||||||||||||  ||||||||  |||||||||||||||||||    
T  12412641 taattaatgatggtggaacccacttagtggtaggacccaccatctatttcttgtgtctatctctctccaa 12412710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 510 - 579
Target Start/End: Complemental strand, 13089820 - 13089751
Alignment:
Q  510 taattaatgatagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaa 579  Q
    ||||||||||| ||||| |||||||| ||||||||||||  |||||| || |||||||||||||||||||    
T  13089820 taattaatgatggtggggcccacttagtggtaggacccaccatctatattttgtgtctatctctctccaa 13089751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 510 - 579
Target Start/End: Original strand, 17944166 - 17944235
Alignment:
Q  510 taattaatgatagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaa 579  Q
    ||||||||||| |||||||||| ||| |||||||||| |  ||||||||| |||||||||||||||||||    
T  17944166 taattaatgatggtgggacccatttagtggtaggacctaccatctattttttgtgtctatctctctccaa 17944235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 510 - 618
Target Start/End: Complemental strand, 17828639 - 17828532
Alignment:
Q  510 taattaatgatagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaatcgtgtacttccatttattttatcaaatg 609  Q
    |||||| ||||  ||||| ||||||||| |||| | ||| |||||||||||||||||||||||||||||||| |  ||| |||| ||||| || ||||||    
T  17828639 taattattgatgatgggatccacttaatagtagaatccactatctattttatgtgtctatctctctccaaattgcatac-tccaattattataccaaatg 17828541  T
Q  610 aagaggatc 618  Q
     ||||||||    
T  17828540 tagaggatc 17828532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 510 - 581
Target Start/End: Original strand, 24484883 - 24484954
Alignment:
Q  510 taattaatgatagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaat 581  Q
    ||||||||||| |||||||||||||| || |||||||||  |  |||||| |||||||||||||||||||||    
T  24484883 taattaatgatggtgggacccacttagtgataggacccaccacttattttttgtgtctatctctctccaaat 24484954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 522 - 616
Target Start/End: Original strand, 23936269 - 23936365
Alignment:
Q  522 gtgggacccacttaatggtaggacccattatctattttatgtgtcta--tctctctccaaatcgtgtacttccatttattttatcaaatgaagagga 616  Q
    ||||||||||||||||||||| | ||  |||| || |||||||||||  ||||||||| ||| |||||||| |||| | ||||||||||| ||||||    
T  23936269 gtgggacccacttaatggtagaatccgctatccatcttatgtgtctatctctctctccgaattgtgtactttcattcaatttatcaaatggagagga 23936365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 510 - 581
Target Start/End: Complemental strand, 32254102 - 32254031
Alignment:
Q  510 taattaatgatagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaat 581  Q
    ||||||||||||||||||| ||||||||| |||||||||  | || |||| | |||||||||| ||||||||    
T  32254102 taattaatgatagtgggactcacttaatgataggacccaccaccttttttttttgtctatctccctccaaat 32254031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 510 - 579
Target Start/End: Complemental strand, 1249217 - 1249150
Alignment:
Q  510 taattaatgatagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaa 579  Q
    ||||||||||| |||||||||||||| ||||||||||||  ||||||||  | ||||| |||||||||||    
T  1249217 taattaatgatggtgggacccacttagtggtaggacccaccatctattt--tttgtctgtctctctccaa 1249150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 583 - 625
Target Start/End: Complemental strand, 9953035 - 9952993
Alignment:
Q  583 gtgtacttccatttattttatcaaatgaagaggatcctaaccc 625  Q
    ||||||||||||||||||||||||||| |||||||| ||||||    
T  9953035 gtgtacttccatttattttatcaaatggagaggatcttaaccc 9952993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 510 - 618
Target Start/End: Complemental strand, 227635 - 227526
Alignment:
Q  510 taattaatgatagtgggacccacttaatggtaggacccattatctatt-ttatgtgtctatctctctccaaatcgtgtacttccatttattttatcaaat 608  Q
    |||| ||||||  ||||| ||||||| ||||||||||||  ||||||| || ||||||||||||||||||||  |   |  ||||||||||||| |||||    
T  227635 taatcaatgatgatgggatccacttagtggtaggacccaccatctattcttttgtgtctatctctctccaaaatgcaaaactccatttattttagcaaat 227536  T
Q  609 gaagaggatc 618  Q
    | ||||||||    
T  227535 ggagaggatc 227526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 510 - 559
Target Start/End: Original strand, 29698167 - 29698216
Alignment:
Q  510 taattaatgatagtgggacccacttaatggtaggacccattatctatttt 559  Q
    ||||||||||| ||||||||||||||||||||||| |||  |||||||||    
T  29698167 taattaatgatggtgggacccacttaatggtaggatccaccatctatttt 29698216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 510 - 581
Target Start/End: Complemental strand, 13888594 - 13888522
Alignment:
Q  510 taattaatgatagtgggacccacttaatggtaggacccattatctatt-ttatgtgtctatctctctccaaat 581  Q
    |||||||||||  ||||||||| |||||||||||| |||  ||||||| || ||||| |||||||||||||||    
T  13888594 taattaatgatgatgggacccagttaatggtaggaaccaccatctattattttgtgtatatctctctccaaat 13888522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 510 - 581
Target Start/End: Complemental strand, 2142364 - 2142293
Alignment:
Q  510 taattaatgatagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaat 581  Q
    ||||||||||| |||| |||||| ||||| | |||||||  |  |||||| |||||||||||||||||||||    
T  2142364 taattaatgatggtggaacccacctaatgatgggacccaccacttattttttgtgtctatctctctccaaat 2142293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 537 - 575
Target Start/End: Complemental strand, 9954370 - 9954332
Alignment:
Q  537 tggtaggacccattatctattttatgtgtctatctctct 575  Q
    |||| ||||||| ||||||||||||||||||||||||||    
T  9954370 tggtgggacccactatctattttatgtgtctatctctct 9954332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 89; Significance: 2e-42; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 510 - 626
Target Start/End: Original strand, 39426214 - 39426330
Alignment:
Q  510 taattaatgatagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaatcgtgtacttccatttattttatcaaatg 609  Q
    |||||||||||||||||||||| ||| |||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  39426214 taattaatgatagtgggacccaattagtggtaggacccactatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatg 39426313  T
Q  610 aagaggatcctaacccc 626  Q
     ||| ||| ||||||||    
T  39426314 gagatgatactaacccc 39426330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 510 - 627
Target Start/End: Complemental strand, 32887851 - 32887735
Alignment:
Q  510 taattaatgatagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaatcgtgtacttccatttattttatcaaatg 609  Q
    ||||||||||| |||||||||| |||||||||||| ||| ||| |||||||||||||||||| |||| |||  |||||| ||||||||||||||||||||    
T  32887851 taattaatgatggtgggacccatttaatggtaggatccactatttattttatgtgtctatctttctctaaactgtgtac-tccatttattttatcaaatg 32887753  T
Q  610 aagaggatcctaacccct 627  Q
    ||||||||||||| ||||    
T  32887752 aagaggatcctaatccct 32887735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 510 - 622
Target Start/End: Complemental strand, 26860121 - 26860010
Alignment:
Q  510 taattaatgatagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaatcgtgtacttccatttattttatcaaatg 609  Q
    ||||||||||| |||||| ||||||| || ||||||| | |||||||||||||||||||||||||| |||||  ||||| |||||||||||||||||||     
T  26860121 taattaatgattgtgggatccacttagtgataggacctactatctattttatgtgtctatctctcttcaaattatgtac-tccatttattttatcaaata 26860023  T
Q  610 aagaggatcctaa 622  Q
     ||| ||||||||    
T  26860022 gagatgatcctaa 26860010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 538 - 624
Target Start/End: Complemental strand, 35534825 - 35534741
Alignment:
Q  538 ggtaggacccattatctattttatgtgtctatctctctccaaatcgtgtacttccatttattttatcaaatgaagaggatcctaacc 624  Q
    ||||||| ||| ||||||||||||||||||||||||||  |||| ||||||||||||||||||||||||||| ||||||| ||||||    
T  35534825 ggtaggatccactatctattttatgtgtctatctctct--aaattgtgtacttccatttattttatcaaatggagaggatactaacc 35534741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 510 - 618
Target Start/End: Original strand, 26372256 - 26372362
Alignment:
Q  510 taattaatgatagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaatcgtgtacttccatttattttatcaaatg 609  Q
    ||||||||| | ||||||||||||||||||||||| | ||| ||||||||| ||||||||||||||  ||||  | |||||||||||||||||||||||     
T  26372256 taattaatggtggtgggacccacttaatggtaggatctattgtctattttacgtgtctatctctct--aaattatctacttccatttattttatcaaatt 26372353  T
Q  610 aagaggatc 618  Q
     ||||||||    
T  26372354 gagaggatc 26372362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 510 - 579
Target Start/End: Original strand, 12151771 - 12151840
Alignment:
Q  510 taattaatgatagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaa 579  Q
    ||||||||||| |||||||||||||| ||||||||||||  ||||||||| ||||||| |||||||||||    
T  12151771 taattaatgatggtgggacccacttagtggtaggacccacaatctattttttgtgtctttctctctccaa 12151840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 510 - 618
Target Start/End: Complemental strand, 50294134 - 50294026
Alignment:
Q  510 taattaatgatagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaatcgtgtacttccatttattttatcaaatg 609  Q
    ||||||||||| || ||| ||||||| ||||||||||||  ||||||||| ||||||||||||||||||| | |   |  ||||||||||||  ||||||    
T  50294134 taattaatgatggtaggatccacttagtggtaggacccaccatctattttttgtgtctatctctctccaacttgcaaatctccatttattttgccaaatg 50294035  T
Q  610 aagaggatc 618  Q
    |||||||||    
T  50294034 aagaggatc 50294026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 510 - 581
Target Start/End: Complemental strand, 5047452 - 5047381
Alignment:
Q  510 taattaatgatagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaat 581  Q
    ||||||||||| ||||||||||| || |||||||| |||||||||||||||||  || ||||||||||||||    
T  5047452 taattaatgatggtgggacccacatagtggtaggatccattatctattttatgcatcaatctctctccaaat 5047381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 522 - 579
Target Start/End: Complemental strand, 7840738 - 7840681
Alignment:
Q  522 gtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaa 579  Q
    ||||||||| |||||||||||||||||| ||||||||  |||||||||||||||||||    
T  7840738 gtgggacccgcttaatggtaggacccatcatctatttcttgtgtctatctctctccaa 7840681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 510 - 618
Target Start/End: Original strand, 32618805 - 32618911
Alignment:
Q  510 taattaatgatagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaatcgtgtacttccatttattttatcaaatg 609  Q
    ||||||||||| |||||||| ||||||| |||||| ||| |||||| ||||| |||| |||||||||||||| |  ||| |||||||||| |  ||||||    
T  32618805 taattaatgatggtgggacctacttaatagtaggatccactatcta-tttatatgtccatctctctccaaattggatac-tccatttattatgccaaatg 32618902  T
Q  610 aagaggatc 618  Q
    |||||||||    
T  32618903 aagaggatc 32618911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 510 - 579
Target Start/End: Original strand, 50484390 - 50484459
Alignment:
Q  510 taattaatgatagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaa 579  Q
    ||||||||||  |||||||||||||| |||| | |||||  ||||||||| |||||||||||||||||||    
T  50484390 taattaatgacggtgggacccacttagtggttgtacccaccatctattttttgtgtctatctctctccaa 50484459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 510 - 625
Target Start/End: Complemental strand, 18976376 - 18976260
Alignment:
Q  510 taattaatgatagtgggacccacttaatggtaggacccattatctatt-ttatgtgtctatctctctccaaatcgtgtacttccatttattttatcaaat 608  Q
    |||||||||||  ||||||| |||||||||| ||| |||  ||||||| || ||||||||||||||||||||| |   |  || |||||||||| |||||    
T  18976376 taattaatgatgatgggacctacttaatggttggatccaccatctattcttttgtgtctatctctctccaaattgcaaaactcaatttattttagcaaat 18976277  T
Q  609 gaagaggatcctaaccc 625  Q
    | |||||||| ||||||    
T  18976276 ggagaggatcttaaccc 18976260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 514 - 581
Target Start/End: Original strand, 24977248 - 24977315
Alignment:
Q  514 taatgatagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaat 581  Q
    ||||||| |||| ||||||||| |||||||| |||  ||||||||| |||||||||||||||| ||||    
T  24977248 taatgattgtggaacccacttagtggtaggatccaccatctattttttgtgtctatctctctctaaat 24977315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 510 - 581
Target Start/End: Complemental strand, 30077715 - 30077644
Alignment:
Q  510 taattaatgatagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaat 581  Q
    ||||||||||||||||||| |||||| || ||| |||||  |  |||||| |||||||||||||||||||||    
T  30077715 taattaatgatagtgggactcacttagtgatagaacccaccacttattttttgtgtctatctctctccaaat 30077644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 510 - 572
Target Start/End: Complemental strand, 24413353 - 24413291
Alignment:
Q  510 taattaatgatagtgggacccacttaatggtaggacccattatctattttatgtgtctatctc 572  Q
    ||||||||||| |||||||||| |||||| |||||||||  ||| ||||| ||||||||||||    
T  24413353 taattaatgatggtgggacccatttaatgataggacccaccatccattttttgtgtctatctc 24413291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 510 - 579
Target Start/End: Complemental strand, 48327224 - 48327156
Alignment:
Q  510 taattaatgatagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaa 579  Q
    ||||||||||| |||| ||||||||| ||||||||| ||  ||||||||| | |||||||||||||||||    
T  48327224 taattaatgatggtgg-acccacttagtggtaggactcaccatctattttttttgtctatctctctccaa 48327156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 510 - 581
Target Start/End: Complemental strand, 52280110 - 52280039
Alignment:
Q  510 taattaatgatagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaat 581  Q
    ||||||||||| |||||| ||||||| || |||||||||  |  |||||| | |||||||||||||||||||    
T  52280110 taattaatgatggtgggatccacttagtgataggacccaccacttattttttatgtctatctctctccaaat 52280039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 510 - 567
Target Start/End: Complemental strand, 12380981 - 12380924
Alignment:
Q  510 taattaatgatagtgggacccacttaatggtaggacccattatctattttatgtgtct 567  Q
    ||||||||||| ||||||| |||||| |||||| |||||  ||||||||| |||||||    
T  12380981 taattaatgatggtgggactcacttagtggtagaacccaccatctattttttgtgtct 12380924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 510 - 567
Target Start/End: Complemental strand, 12385048 - 12384991
Alignment:
Q  510 taattaatgatagtgggacccacttaatggtaggacccattatctattttatgtgtct 567  Q
    ||||||||||| ||||||| |||||| |||||| |||||  ||||||||| |||||||    
T  12385048 taattaatgatggtgggactcacttagtggtagaacccaccatctattttttgtgtct 12384991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 74; Significance: 2e-33; HSPs: 26)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 511 - 624
Target Start/End: Original strand, 30709115 - 30709228
Alignment:
Q  511 aattaatgatagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaatcgtgtacttccatttattttatcaaatga 610  Q
    |||||||||| |||||| ||||||| |||||||||||| |||||||||||||||||||||||||||||||| |||||||| |||| ||||||| | |||     
T  30709115 aattaatgatggtgggatccacttagtggtaggacccaatatctattttatgtgtctatctctctccaaattgtgtactttcattgattttataagatgg 30709214  T
Q  611 agaggatcctaacc 624  Q
    ||||||||||||||    
T  30709215 agaggatcctaacc 30709228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 510 - 625
Target Start/End: Complemental strand, 4446967 - 4446852
Alignment:
Q  510 taattaatgatagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaatcgtgtacttccatttattttatcaaatg 609  Q
    |||||||||||||||  ||||| ||| |||||||| ||| |||||||||||||||||||||||||| ||||| ||  |||||||||||||||||||||||    
T  4446967 taattaatgatagtgaaacccaattagtggtaggatccactatctattttatgtgtctatctctcttcaaattgtacacttccatttattttatcaaatg 4446868  T
Q  610 aagaggatcctaaccc 625  Q
     ||||||| |||||||    
T  4446867 gagaggatactaaccc 4446852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 510 - 627
Target Start/End: Original strand, 19908784 - 19908899
Alignment:
Q  510 taattaatgatagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaatcgtgtacttccatttattttatcaaatg 609  Q
    ||||||||||| |||||||||||||||  ||||||| || ||||||||||||||||||||||| |||||||| |  ||| |||||||||| |||||||||    
T  19908784 taattaatgatggtgggacccacttaaaagtaggactcactatctattttatgtgtctatctc-ctccaaattgcatac-tccatttattatatcaaatg 19908881  T
Q  610 aagaggatcctaacccct 627  Q
    ||||||||| | ||||||    
T  19908882 aagaggatctttacccct 19908899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 550 - 625
Target Start/End: Original strand, 30217517 - 30217592
Alignment:
Q  550 tatctattttatgtgtctatctctctccaaatcgtgtacttccatttattttatcaaatgaagaggatcctaaccc 625  Q
    ||||||||||||||||||||||| ||| |||| |||| |||||||||||||||||||||  |||||||||||||||    
T  30217517 tatctattttatgtgtctatctcactctaaattgtgtgcttccatttattttatcaaatagagaggatcctaaccc 30217592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 510 - 626
Target Start/End: Complemental strand, 31618838 - 31618724
Alignment:
Q  510 taattaatgatagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaatcgtgtacttccatttattttatcaaatg 609  Q
    ||||||||||| ||||||| ||||||||| || ||| || |||||||||||| | ||||||| ||||||||| || ||| |||||||  |||||||||||    
T  31618838 taattaatgattgtgggactcacttaatgatatgactcactatctattttatatatctatctttctccaaattgtatac-tccattt-ctttatcaaatg 31618741  T
Q  610 aagaggatcctaacccc 626  Q
     ||||||||||||||||    
T  31618740 gagaggatcctaacccc 31618724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 510 - 579
Target Start/End: Original strand, 13238685 - 13238754
Alignment:
Q  510 taattaatgatagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaa 579  Q
    ||||||||||| |||||||||||||  ||||||||||||  ||||||||| |||||||||||||||||||    
T  13238685 taattaatgatggtgggacccacttggtggtaggacccaccatctattttttgtgtctatctctctccaa 13238754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 510 - 575
Target Start/End: Original strand, 28564896 - 28564961
Alignment:
Q  510 taattaatgatagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctct 575  Q
    ||||||||||| |||||||||||||| ||||||||||||  ||||||||| |||||||||||||||    
T  28564896 taattaatgatggtgggacccacttagtggtaggacccaccatctattttttgtgtctatctctct 28564961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 510 - 579
Target Start/End: Original strand, 35316829 - 35316898
Alignment:
Q  510 taattaatgatagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaa 579  Q
    ||||||||||| |||||||||||||| |||||||| |||  ||||||||| |||||||||||||||||||    
T  35316829 taattaatgatggtgggacccacttagtggtaggatccaccatctattttttgtgtctatctctctccaa 35316898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 510 - 581
Target Start/End: Original strand, 15709772 - 15709843
Alignment:
Q  510 taattaatgatagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaat 581  Q
    |||||||||||  ||| |||||||||||||||||| ||| |||||||||||| ||| |||||||||||||||    
T  15709772 taattaatgatgatggaacccacttaatggtaggatccactatctattttatatgtttatctctctccaaat 15709843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 510 - 622
Target Start/End: Complemental strand, 30857749 - 30857638
Alignment:
Q  510 taattaatgatagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaatcgtgtacttccatttattttatcaaatg 609  Q
    ||||||||||| ||| || ||| ||||| |||||| |||||||||||||| |||||||| |||||| |||||    ||| |||||||||||| | |||||    
T  30857749 taattaatgatggtgtgatccatttaatagtaggatccattatctattttttgtgtctacctctcttcaaattacatac-tccatttattttgtgaaatg 30857651  T
Q  610 aagaggatcctaa 622  Q
     ||||||||||||    
T  30857650 gagaggatcctaa 30857638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 510 - 581
Target Start/End: Original strand, 8988859 - 8988930
Alignment:
Q  510 taattaatgatagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaat 581  Q
    ||||||||||| |||||||||||||| || ||||||| || |  |||||| |||||||||||||||||||||    
T  8988859 taattaatgatggtgggacccacttagtgataggacctatcacttattttttgtgtctatctctctccaaat 8988930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 510 - 581
Target Start/End: Complemental strand, 21454565 - 21454495
Alignment:
Q  510 taattaatgatagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaat 581  Q
    ||||||||||| |||| ||||||||||||||| ||||||  ||||||||| |||||||||||||||| ||||    
T  21454565 taattaatgatggtggaacccacttaatggtatgacccacaatctatttt-tgtgtctatctctctctaaat 21454495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 556 - 626
Target Start/End: Complemental strand, 30721632 - 30721564
Alignment:
Q  556 ttttatgtgtctatctctctccaaatcgtgtacttccatttattttatcaaatgaagaggatcctaacccc 626  Q
    |||||||||||||||||||  ||||| ||||||||| ||||||||||||||||| || ||||| |||||||    
T  30721632 ttttatgtgtctatctctc--caaattgtgtacttctatttattttatcaaatggagcggatcttaacccc 30721564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 510 - 581
Target Start/End: Complemental strand, 35315359 - 35315288
Alignment:
Q  510 taattaatgatagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaat 581  Q
    |||||||| || ||||||| || ||||| ||| || |||||||||||||||||||||||||||||| |||||    
T  35315359 taattaataatggtgggactcaattaatagtaagatccattatctattttatgtgtctatctctcttcaaat 35315288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 510 - 581
Target Start/End: Original strand, 36929720 - 36929791
Alignment:
Q  510 taattaatgatagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaat 581  Q
    ||||||||||| | || | ||| ||||||||||||| || || |||||||||||||||||||||||||||||    
T  36929720 taattaatgatggcggaatccatttaatggtaggacacactacctattttatgtgtctatctctctccaaat 36929791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 510 - 581
Target Start/End: Original strand, 38397085 - 38397156
Alignment:
Q  510 taattaatgatagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaat 581  Q
    |||||| |||| ||||||| |||||||| |||| ||||| |||||||||||| ||||||||||||| |||||    
T  38397085 taattattgatggtgggactcacttaatagtagcacccactatctattttatttgtctatctctcttcaaat 38397156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 512 - 625
Target Start/End: Original strand, 2063359 - 2063472
Alignment:
Q  512 attaatgatagtgggacccacttaatggtaggacccatt-atctattttatgtgtctatctctctccaaatcgtgtacttccatttattttatcaaatga 610  Q
    ||||||||| |||| ||||||||  |||||||||| |   ||||||||| ||||||||||||||||||||| |   || || ||||||||| ||||||||    
T  2063359 attaatgatggtggaacccacttggtggtaggaccaaaccatctattttttgtgtctatctctctccaaattgcaaac-tctatttattttgtcaaatga 2063457  T
Q  611 agaggatcctaaccc 625  Q
    |||||||| ||||||    
T  2063458 agaggatcttaaccc 2063472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 511 - 581
Target Start/End: Complemental strand, 34512095 - 34512025
Alignment:
Q  511 aattaatgatagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaat 581  Q
    |||||||||| ||| |||| ||||||| |||  ||||| |||||||||||||||||||||| |||||||||    
T  34512095 aattaatgattgtgagacctacttaatagtataacccactatctattttatgtgtctatctttctccaaat 34512025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 510 - 579
Target Start/End: Complemental strand, 23259558 - 23259489
Alignment:
Q  510 taattaatgatagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaa 579  Q
    ||||||||||| |||||| ||||||| | ||||||||||  | ||||||| |||||||||||||||||||    
T  23259558 taattaatgatggtgggatccacttagtagtaggacccaccagctattttttgtgtctatctctctccaa 23259489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 510 - 581
Target Start/End: Original strand, 374997 - 375068
Alignment:
Q  510 taattaatgatagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaat 581  Q
    ||||||||||| |||||||||||||| |  |||||||||  |  |||||| |||||||||||||||||||||    
T  374997 taattaatgatggtgggacccacttagtaataggacccaccacttattttttgtgtctatctctctccaaat 375068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 442 - 484
Target Start/End: Original strand, 6946245 - 6946287
Alignment:
Q  442 gtcaagatcttctccattttttcatttggagagatatagactc 484  Q
    ||||||||||||| |||||||| ||||||||||||||||||||    
T  6946245 gtcaagatcttcttcattttttaatttggagagatatagactc 6946287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 514 - 581
Target Start/End: Original strand, 19905889 - 19905956
Alignment:
Q  514 taatgatagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaat 581  Q
    ||||||| ||||||| ||||||||  || | ||||  |||||||||||||||||||||||||| ||||    
T  19905889 taatgatggtgggactcacttaataatatgtcccaccatctattttatgtgtctatctctctcaaaat 19905956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 510 - 581
Target Start/End: Complemental strand, 23459917 - 23459846
Alignment:
Q  510 taattaatgatagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaat 581  Q
    ||||||||||| |||||||||| ||| || ||||||||   |  |||||| |||||||||||||||||||||    
T  23459917 taattaatgatggtgggacccatttagtgataggacccgccacttattttttgtgtctatctctctccaaat 23459846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 510 - 576
Target Start/End: Complemental strand, 4603180 - 4603114
Alignment:
Q  510 taattaatgatagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctc 576  Q
    ||||||||||| ||||||||||  ||||||||| || |||||| |||| | | ||||||||||||||    
T  4603180 taattaatgatggtgggacccatctaatggtagaactcattatatattgtctatgtctatctctctc 4603114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 511 - 581
Target Start/End: Original strand, 15722239 - 15722309
Alignment:
Q  511 aattaatgatagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaat 581  Q
    |||||||||| |||| ||||| ||||||||||||   | |||||||||||| ||| ||||||| |||||||    
T  15722239 aattaatgatggtggaacccatttaatggtaggataaactatctattttatatgtttatctctttccaaat 15722309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 552 - 618
Target Start/End: Complemental strand, 22061498 - 22061433
Alignment:
Q  552 tctattttatgtgtctatctctctccaaatcgtgtacttccatttattttatcaaatgaagaggatc 618  Q
    |||||||||||||||||||||||| ||||| |  ||||| |||||||||| ||||||  ||||||||    
T  22061498 tctattttatgtgtctatctctcttcaaattgcatactt-catttattttgtcaaattgagaggatc 22061433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 67; Significance: 2e-29; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 510 - 624
Target Start/End: Original strand, 42761717 - 42761831
Alignment:
Q  510 taattaatgatagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaatcgtgtacttccatttattttatcaaatg 609  Q
    |||||||||||  ||| ||||||| | |||||||| ||| |||||||||||||||||||||||||| ||||| | ||||||||||||||||||| || ||    
T  42761717 taattaatgatgatggaacccactgagtggtaggatccactatctattttatgtgtctatctctcttcaaattgcgtacttccatttattttattaagtg 42761816  T
Q  610 aagaggatcctaacc 624  Q
    |||||||||||||||    
T  42761817 aagaggatcctaacc 42761831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 510 - 579
Target Start/End: Complemental strand, 30426740 - 30426671
Alignment:
Q  510 taattaatgatagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaa 579  Q
    ||||||||||| |||||||||||||| ||||||||||||  ||||||||| |||||||||||||||||||    
T  30426740 taattaatgatggtgggacccacttagtggtaggacccaccatctattttttgtgtctatctctctccaa 30426671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 510 - 627
Target Start/End: Original strand, 21360280 - 21360400
Alignment:
Q  510 taattaatgatagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaat----cgtgtacttccatttattttatca 605  Q
    |||||||| || |||||  ||||||||||||| || | ||||||||| |||||||| |||||||||||||||      ||||||| ||||||||||||||    
T  21360280 taattaataatggtggggtccacttaatggtatgatctattatctatattatgtgtttatctctctccaaattatgtatgtactt-catttattttatca 21360378  T
Q  606 aatgaagaggatcctaacccct 627  Q
    |||| |||||||||||||||||    
T  21360379 aatggagaggatcctaacccct 21360400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 510 - 579
Target Start/End: Original strand, 28069723 - 28069792
Alignment:
Q  510 taattaatgatagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaa 579  Q
    ||||||||||| |||||||||||||| ||||||||||||  ||||||||| ||||||| |||||||||||    
T  28069723 taattaatgatggtgggacccacttagtggtaggacccaccatctattttttgtgtctttctctctccaa 28069792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 510 - 579
Target Start/End: Original strand, 36991360 - 36991429
Alignment:
Q  510 taattaatgatagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaa 579  Q
    ||||||||||| |||||||||||||| ||||||||||||| ||||||||  | |||||||||||||||||    
T  36991360 taattaatgatggtgggacccacttagtggtaggacccatcatctatttcttatgtctatctctctccaa 36991429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 510 - 581
Target Start/End: Original strand, 18689495 - 18689566
Alignment:
Q  510 taattaatgatagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaat 581  Q
    |||||||||||  ||| |||||||||||||||||| ||| |||||||||||| ||| |||||||||||||||    
T  18689495 taattaatgatgatggaacccacttaatggtaggatccactatctattttatatgtttatctctctccaaat 18689566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 510 - 581
Target Start/End: Complemental strand, 24557252 - 24557181
Alignment:
Q  510 taattaatgatagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaat 581  Q
    |||||||||||  |||||| |||||||||||||||||||||| ||||||||||| | ||||||| |||||||    
T  24557252 taattaatgatgatgggactcacttaatggtaggacccattacctattttatgtctatatctctttccaaat 24557181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 510 - 581
Target Start/End: Complemental strand, 26749619 - 26749548
Alignment:
Q  510 taattaatgatagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaat 581  Q
    ||||||||||| |||||||||||||| || |||||||||| |  |||||| |||||||||||||||||||||    
T  26749619 taattaatgatggtgggacccacttagtgataggacccatcacttattttttgtgtctatctctctccaaat 26749548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 510 - 581
Target Start/End: Complemental strand, 36748562 - 36748492
Alignment:
Q  510 taattaatgatagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaat 581  Q
    ||||||||||| |||||| |||||||||||||||||||  | |||||||| ||||||||||| |||||||||    
T  36748562 taattaatgatggtgggatccacttaatggtaggacccgctgtctatttt-tgtgtctatctatctccaaat 36748492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 510 - 620
Target Start/End: Complemental strand, 42338117 - 42338008
Alignment:
Q  510 taattaatgatagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaatcgtgtacttccatttattttatcaaatg 609  Q
    ||||||||||| | ||||| |||||||| |||  | ||| |||||||||||  ||| ||| |||||||||||  | |||||  |||||||||||||||||    
T  42338117 taattaatgatggagggacacacttaatagtacaatccactatctattttacatgtatatatctctccaaattatatactta-atttattttatcaaatg 42338019  T
Q  610 aagaggatcct 620  Q
    |||||||||||    
T  42338018 aagaggatcct 42338008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 510 - 618
Target Start/End: Original strand, 6014198 - 6014307
Alignment:
Q  510 taattaatgatagtgggacccacttaatggtaggacccattatctatt-ttatgtgtctatctctctccaaatcgtgtacttccatttattttatcaaat 608  Q
    |||||||||||| | ||| |||||||||||||||||| || ||||||| || ||||||||||| ||||||||| |   |  || |||||||||| |||||    
T  6014198 taattaatgataataggatccacttaatggtaggacctatcatctattcttttgtgtctatctttctccaaattgcaaaactctatttattttagcaaat 6014297  T
Q  609 gaagaggatc 618  Q
    | ||||||||    
T  6014298 ggagaggatc 6014307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 510 - 574
Target Start/End: Complemental strand, 10672583 - 10672519
Alignment:
Q  510 taattaatgatagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctc 574  Q
    ||||||||||| ||||||| |||||| |||||||| |||  ||||||||| ||||||||||||||    
T  10672583 taattaatgatggtgggactcacttagtggtaggatccaccatctattttttgtgtctatctctc 10672519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 527 - 581
Target Start/End: Original strand, 17520403 - 17520457
Alignment:
Q  527 acccacttaatggtaggacccattatctattttatgtgtctatctctctccaaat 581  Q
    ||||||||||| ||||||| |  |||||||||||||||||||| |||||||||||    
T  17520403 acccacttaatagtaggactcgctatctattttatgtgtctatatctctccaaat 17520457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 514 - 579
Target Start/End: Complemental strand, 40695314 - 40695249
Alignment:
Q  514 taatgatagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaa 579  Q
    ||||||| |||| || |||||| |||||||||| |  ||||||||| |||||||||||||||||||    
T  40695314 taatgatggtggaactcacttagtggtaggacctaccatctattttttgtgtctatctctctccaa 40695249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 510 - 581
Target Start/End: Original strand, 34612568 - 34612639
Alignment:
Q  510 taattaatgatagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaat 581  Q
    ||||||||||| ||| |||||||||| || |||||||||  |  |||||| |||||||||||||||| ||||    
T  34612568 taattaatgatggtgagacccacttagtgataggacccaccacttattttttgtgtctatctctctctaaat 34612639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 510 - 579
Target Start/End: Complemental strand, 10652688 - 10652619
Alignment:
Q  510 taattaatgatagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaa 579  Q
    ||||||||||| |||||||||| ||| | ||| ||||||  ||| ||||| ||| |||||||||||||||    
T  10652688 taattaatgatggtgggacccaattagtagtatgacccaccatcaattttttgtatctatctctctccaa 10652619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 510 - 575
Target Start/End: Original strand, 24102020 - 24102085
Alignment:
Q  510 taattaatgatagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctct 575  Q
    ||||||||||| |||| || |||||| |||||||| |||  ||||||||| | |||||||||||||    
T  24102020 taattaatgatggtggaactcacttagtggtaggatccaccatctattttttatgtctatctctct 24102085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 510 - 559
Target Start/End: Complemental strand, 28318973 - 28318924
Alignment:
Q  510 taattaatgatagtgggacccacttaatggtaggacccattatctatttt 559  Q
    ||||||||||| || ||||||||||| |||||||||||| ||||| ||||    
T  28318973 taattaatgatggttggacccacttagtggtaggacccactatctttttt 28318924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 510 - 579
Target Start/End: Original strand, 41511266 - 41511335
Alignment:
Q  510 taattaatgatagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaa 579  Q
    ||||||||||| |||| | ||||||| || ||||||||| |||||||||| | | ||||||||| |||||    
T  41511266 taattaatgatggtggaaaccacttagtgataggacccactatctattttttatatctatctctttccaa 41511335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 510 - 559
Target Start/End: Complemental strand, 44859238 - 44859189
Alignment:
Q  510 taattaatgatagtgggacccacttaatggtaggacccattatctatttt 559  Q
    ||||||||||| |||||||||||||| |||||| |||||  |||||||||    
T  44859238 taattaatgatggtgggacccacttagtggtagaacccaccatctatttt 44859189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 61; Significance: 9e-26; HSPs: 26)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 510 - 618
Target Start/End: Original strand, 29340999 - 29341106
Alignment:
Q  510 taattaatgatagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaatcgtgtacttccatttattttatcaaatg 609  Q
    ||||||||||| |||||||||||||||| |||||||||| |||||||||| ||||||||||||||||||||| |  ||| |||||||||| || ||||||    
T  29340999 taattaatgatggtgggacccacttaatagtaggacccactatctattttctgtgtctatctctctccaaattgcatac-tccatttattataccaaatg 29341097  T
Q  610 aagaggatc 618  Q
     ||||||||    
T  29341098 gagaggatc 29341106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 510 - 579
Target Start/End: Complemental strand, 4895806 - 4895737
Alignment:
Q  510 taattaatgatagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaa 579  Q
    ||||||||||| |||||||||||||| ||||||||||||  ||||||||| |||||||||||||||||||    
T  4895806 taattaatgatggtgggacccacttagtggtaggacccaccatctattttttgtgtctatctctctccaa 4895737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 510 - 579
Target Start/End: Complemental strand, 35660680 - 35660611
Alignment:
Q  510 taattaatgatagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaa 579  Q
    ||||||||||| |||||||||||||| ||||||||||||  ||||||||| |||||||||||||||||||    
T  35660680 taattaatgatggtgggacccacttagtggtaggacccaccatctattttttgtgtctatctctctccaa 35660611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 510 - 579
Target Start/End: Original strand, 14349807 - 14349876
Alignment:
Q  510 taattaatgatagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaa 579  Q
    ||||||||||| |||||||||||||| ||||||||||||  ||||||||| ||||||| |||||||||||    
T  14349807 taattaatgatggtgggacccacttagtggtaggacccaccatctattttttgtgtctgtctctctccaa 14349876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 510 - 579
Target Start/End: Complemental strand, 18625492 - 18625423
Alignment:
Q  510 taattaatgatagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaa 579  Q
    ||||||||||| |||||||||||||| ||||||||||||  ||||||||| ||||||| |||||||||||    
T  18625492 taattaatgatggtgggacccacttagtggtaggacccaccatctattttttgtgtctttctctctccaa 18625423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 510 - 579
Target Start/End: Complemental strand, 32129688 - 32129619
Alignment:
Q  510 taattaatgatagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaa 579  Q
    ||||||||||| |||||||||||||| ||||||||||||  |||||||||  ||||||||||||||||||    
T  32129688 taattaatgatggtgggacccacttagtggtaggacccaccatctatttttggtgtctatctctctccaa 32129619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 510 - 579
Target Start/End: Original strand, 37266735 - 37266804
Alignment:
Q  510 taattaatgatagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaa 579  Q
    ||||||||||| |||||||||||||| ||||| ||||||  ||||||||| |||||||||||||||||||    
T  37266735 taattaatgatggtgggacccacttagtggtatgacccaccatctattttttgtgtctatctctctccaa 37266804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 510 - 618
Target Start/End: Original strand, 11775797 - 11775905
Alignment:
Q  510 taattaatgatagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaatcgtgtacttccatttattttatcaaatg 609  Q
    ||||||||||  |||||||||||||| |||||||| |||  ||||||||| ||||||||||||||||||| | |   |  ||||||||||||| ||||||    
T  11775797 taattaatgacggtgggacccacttagtggtaggatccaccatctattttttgtgtctatctctctccaacttgcaaaactccatttattttaccaaatg 11775896  T
Q  610 aagaggatc 618  Q
     ||||||||    
T  11775897 gagaggatc 11775905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 511 - 618
Target Start/End: Original strand, 43309113 - 43309220
Alignment:
Q  511 aattaatgatagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaatcgtgtacttccatttattttatcaaatga 610  Q
    |||||||||| |||| ||||| ||||||||| || ||| |||||||||| | ||||||||||||||||| | |   |  ||||||||||||||||||| |    
T  43309113 aattaatgatggtggaacccatttaatggtaagatccactatctattttttatgtctatctctctccaacttgcaaaactccatttattttatcaaataa 43309212  T
Q  611 agaggatc 618  Q
    ||||||||    
T  43309213 agaggatc 43309220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 510 - 579
Target Start/End: Complemental strand, 40753233 - 40753164
Alignment:
Q  510 taattaatgatagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaa 579  Q
    ||||||||||| |||||||||||||| ||||||||||||  || |||||| ||||||||||| |||||||    
T  40753233 taattaatgatggtgggacccacttagtggtaggacccaccatatattttttgtgtctatctttctccaa 40753164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 510 - 581
Target Start/End: Original strand, 31653039 - 31653110
Alignment:
Q  510 taattaatgatagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaat 581  Q
    ||||||||||| ||| ||| |||||||| ||||||| |  |||||||||||||||| |||||||||||||||    
T  31653039 taattaatgattgtgagactcacttaatagtaggactcgctatctattttatgtgtttatctctctccaaat 31653110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 510 - 579
Target Start/End: Original strand, 13032122 - 13032191
Alignment:
Q  510 taattaatgatagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaa 579  Q
    ||||||||||| |||||||||| ||| ||||||||| ||  ||||||||  |||||||||||||||||||    
T  13032122 taattaatgatggtgggacccatttagtggtaggactcaccatctatttcttgtgtctatctctctccaa 13032191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 510 - 579
Target Start/End: Original strand, 34827196 - 34827265
Alignment:
Q  510 taattaatgatagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaa 579  Q
    ||||||| ||| |||||||||||||| |||||||| |||  ||||||||| | |||||||||||||||||    
T  34827196 taattaaagatggtgggacccacttagtggtaggatccaccatctattttttttgtctatctctctccaa 34827265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 510 - 581
Target Start/End: Complemental strand, 2984461 - 2984390
Alignment:
Q  510 taattaatgatagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaat 581  Q
    ||||||||||| |||||||||| ||| || |||||  ||| |  ||||||||||||||||||||||||||||    
T  2984461 taattaatgatggtgggacccatttagtgataggattcatcacttattttatgtgtctatctctctccaaat 2984390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 510 - 577
Target Start/End: Complemental strand, 10362085 - 10362018
Alignment:
Q  510 taattaatgatagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctcc 577  Q
    ||||||||||  ||| ||||||||||||||||||| ||| || | ||||||||| |||||||||||||    
T  10362085 taattaatgacggtgagacccacttaatggtaggatccactaccaattttatgtctctatctctctcc 10362018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 510 - 581
Target Start/End: Original strand, 36290606 - 36290677
Alignment:
Q  510 taattaatgatagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaat 581  Q
    ||||||||||| |||||| ||||||| || |||||||||  |  |||||| |||||||||||||||||||||    
T  36290606 taattaatgatggtgggatccacttagtgataggacccaccacttattttttgtgtctatctctctccaaat 36290677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 510 - 616
Target Start/End: Original strand, 39902419 - 39902525
Alignment:
Q  510 taattaatgatagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaatcgtgtacttccatttattttatcaaatg 609  Q
    ||||||||||| |||| | ||| ||| ||||||||||||  ||||||||  ||||| ||||||||||||| | ||  |  |||||||||||| |||||||    
T  39902419 taattaatgatggtggaatccatttagtggtaggacccaccatctatttcttgtgtttatctctctccaacttgtaaaactccatttattttgtcaaatg 39902518  T
Q  610 aagagga 616  Q
     ||||||    
T  39902519 gagagga 39902525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 514 - 575
Target Start/End: Original strand, 14688582 - 14688643
Alignment:
Q  514 taatgatagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctct 575  Q
    ||||||| |||| | |||||||||||||| | ||| ||||||||||||||||| ||||||||    
T  14688582 taatgatggtggaatccacttaatggtagaatccaatatctattttatgtgtcgatctctct 14688643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 513 - 581
Target Start/End: Complemental strand, 27428949 - 27428881
Alignment:
Q  513 ttaatgatagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaat 581  Q
    |||||||| |||| || |||||||||||||||  ||  ||||||||| ||||||||||||| |||||||    
T  27428949 ttaatgatggtggaactcacttaatggtaggattcaccatctattttttgtgtctatctctttccaaat 27428881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 510 - 581
Target Start/End: Complemental strand, 3057225 - 3057154
Alignment:
Q  510 taattaatgatagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaat 581  Q
    |||||||||||  || ||| ||||||||||||||| |||  ||||||||| ||||| ||||||| |||||||    
T  3057225 taattaatgattatgtgactcacttaatggtaggatccaccatctattttttgtgtttatctctatccaaat 3057154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 530 - 581
Target Start/End: Original strand, 18653385 - 18653436
Alignment:
Q  530 cacttaatggtaggacccattatctattttatgtgtctatctctctccaaat 581  Q
    ||||||||||||| || || |||||||||| ||||||||||||||| |||||    
T  18653385 cacttaatggtagaactcactatctattttttgtgtctatctctcttcaaat 18653436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 510 - 581
Target Start/End: Original strand, 31279918 - 31279989
Alignment:
Q  510 taattaatgatagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaat 581  Q
    |||||||| || || |||||||| ||||| |||||||||  || ||||||||||||||| | ||||||||||    
T  31279918 taattaattatggtaggacccacataatgataggacccacaatttattttatgtgtctagcactctccaaat 31279989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 510 - 573
Target Start/End: Original strand, 43222130 - 43222193
Alignment:
Q  510 taattaatgatagtgggacccacttaatggtaggacccattatctattttatgtgtctatctct 573  Q
    ||||||||||| |||||| ||| |||||| || ||||||  ||||||||| |||||||||||||    
T  43222130 taattaatgatggtgggatccatttaatgataagacccaccatctattttttgtgtctatctct 43222193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 510 - 564
Target Start/End: Original strand, 4592804 - 4592858
Alignment:
Q  510 taattaatgatagtgggacccacttaatggtaggacccattatctattttatgtg 564  Q
    ||||||||||| |||||||||||||| ||||| ||||||  ||||||||| ||||    
T  4592804 taattaatgatggtgggacccacttagtggtaagacccaccatctattttttgtg 4592858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 554 - 620
Target Start/End: Complemental strand, 9460662 - 9460597
Alignment:
Q  554 tattttatgtgtctatctctctccaaatcgtgtacttccatttattttatcaaatgaagaggatcct 620  Q
    |||| ||||||||||||||||||||||| |  ||| || |||||||||| |||||| ||||||||||    
T  9460662 tattatatgtgtctatctctctccaaattgcatac-tctatttattttaccaaatggagaggatcct 9460597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 591 - 625
Target Start/End: Original strand, 21213953 - 21213987
Alignment:
Q  591 ccatttattttatcaaatgaagaggatcctaaccc 625  Q
    ||||||||||||||||||| |||||||||||||||    
T  21213953 ccatttattttatcaaatggagaggatcctaaccc 21213987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 53; Significance: 5e-21; HSPs: 27)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 510 - 618
Target Start/End: Original strand, 4888471 - 4888579
Alignment:
Q  510 taattaatgatagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaatcgtgtacttccatttattttatcaaatg 609  Q
    ||||||||||| |||||||| ||||| |||||||||||| |||||||||| ||||||||||||||||||| | |   |  |||||||||||| |||||||    
T  4888471 taattaatgatggtgggacctacttagtggtaggacccactatctattttttgtgtctatctctctccaacttgcaaatctccatttattttgtcaaatg 4888570  T
Q  610 aagaggatc 618  Q
     ||||||||    
T  4888571 gagaggatc 4888579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 25 - 179
Target Start/End: Original strand, 46115347 - 46115506
Alignment:
Q  25 atgttggcttggcatacttctt-----ggtgcactttcagtatctttagagtttgaaactgtcgttctaagaaatttttgttgccggtcttaaacatggc 119  Q
    ||||||||||||||||||||||     | ||||||||||||| || |||| ||||||||| ||| |||||| ||||| |||||| | ||||||| ||||     
T  46115347 atgttggcttggcatacttcttttcttgatgcactttcagtaactatagattttgaaactctcgctctaaggaatttctgttgctgatcttaaatatgga 46115446  T
Q  120 agtgaatggtgtgaagtaaatagttttgtttttctataaatttctaagaaaaatacaaat 179  Q
    ||| |||  |||||  ||||||||| |  |||||| ||||||||||||||||||| ||||    
T  46115447 agttaataatgtgatttaaatagttctccttttctctaaatttctaagaaaaataaaaat 46115506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 510 - 579
Target Start/End: Complemental strand, 25084799 - 25084730
Alignment:
Q  510 taattaatgatagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaa 579  Q
    ||||||||||| |||||||||||||| ||||||||||||  ||||||||| |||||||||||||||||||    
T  25084799 taattaatgatggtgggacccacttagtggtaggacccaccatctattttttgtgtctatctctctccaa 25084730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 536 - 625
Target Start/End: Original strand, 47270580 - 47270668
Alignment:
Q  536 atggtaggacccattatctattttatgtgtctatctctctccaaatcgtgtacttccatttattttatcaaatgaagaggatcctaaccc 625  Q
    |||||||| || ||||||||||| |||||||||||| |||| |||| ||||| ||||||||||||||||||||  |||||||||||||||    
T  47270580 atggtagggcctattatctattt-atgtgtctatctatctctaaattgtgtaattccatttattttatcaaatagagaggatcctaaccc 47270668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 510 - 579
Target Start/End: Original strand, 12139330 - 12139400
Alignment:
Q  510 taattaatgatagtgggaccc-acttaatggtaggacccattatctattttatgtgtctatctctctccaa 579  Q
    ||||||||||| ||||||||| ||||||||||||||||||  ||||||||| |||||||||||||||||||    
T  12139330 taattaatgatggtgggaccccacttaatggtaggacccaccatctattttttgtgtctatctctctccaa 12139400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 510 - 579
Target Start/End: Complemental strand, 9559125 - 9559056
Alignment:
Q  510 taattaatgatagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaa 579  Q
    ||||||||||| |||||||||||||| ||||||||||||  ||||||||| ||| |||||||||||||||    
T  9559125 taattaatgatggtgggacccacttagtggtaggacccaccatctattttttgtatctatctctctccaa 9559056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 510 - 623
Target Start/End: Complemental strand, 40023327 - 40023215
Alignment:
Q  510 taattaatgatagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaatcgtgtacttccatttattttatcaaatg 609  Q
    ||||||||| | |||||||||||||||||||| || |||||| ||||||||| ||||||||| ||||||||| || ||| ||  |||||||| ||||||     
T  40023327 taattaatggtggtgggacccacttaatggtaagatccattaactattttatatgtctatctttctccaaattgtatac-tcgttttattttttcaaata 40023229  T
Q  610 aagaggatcctaac 623  Q
     ||||||| |||||    
T  40023228 gagaggattctaac 40023215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 510 - 581
Target Start/End: Original strand, 32915960 - 32916031
Alignment:
Q  510 taattaatgatagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaat 581  Q
    ||||| ||||| ||||||| ||||||||||||||||||| ||| |||||| ||||||||||||||| |||||    
T  32915960 taattcatgatggtgggactcacttaatggtaggacccactatttattttttgtgtctatctctcttcaaat 32916031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 510 - 581
Target Start/End: Complemental strand, 39855884 - 39855813
Alignment:
Q  510 taattaatgatagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaat 581  Q
    |||||||||||  ||||||||||||| |||||||||| |  |||| ||||||||||||||||||||||||||    
T  39855884 taattaatgatgatgggacccacttagtggtaggaccgaccatcttttttatgtgtctatctctctccaaat 39855813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 510 - 581
Target Start/End: Complemental strand, 47799971 - 47799900
Alignment:
Q  510 taattaatgatagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaat 581  Q
    ||||||||||| |||||||||||||| || |||||||||| |  |||||| |||||||||||||||||||||    
T  47799971 taattaatgatggtgggacccacttagtgataggacccatcacttattttttgtgtctatctctctccaaat 47799900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 510 - 626
Target Start/End: Original strand, 33450510 - 33450627
Alignment:
Q  510 taattaatgatagtgggacccacttaatggtaggacccattatctatt-ttatgtgtctatctctctccaaatcgtgtacttccatttattttatcaaat 608  Q
    |||||||||||  ||||||||||||| |||| |||||||  ||||||| || ||||||||||||||||||||| |   |  || |||||||||| |||||    
T  33450510 taattaatgatgatgggacccacttagtggttggacccaccatctattcttttgtgtctatctctctccaaattgcaaaactcaatttattttagcaaat 33450609  T
Q  609 gaagaggatcctaacccc 626  Q
    | |||||||| |||||||    
T  33450610 ggagaggatcttaacccc 33450627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 510 - 618
Target Start/End: Complemental strand, 7712438 - 7712331
Alignment:
Q  510 taattaatgatagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaatcgtgtacttccatttattttatcaaatg 609  Q
    ||||||| ||| |||| ||||||||||||||||||| || ||||||| |||||| |||||||||||| |||| |  | ||||||||||||||   |||||    
T  7712438 taattaaagatggtggcacccacttaatggtaggactcactatctatcttatgtctctatctctctctaaattgcat-cttccatttatttttataaatg 7712340  T
Q  610 aagaggatc 618  Q
     ||||||||    
T  7712339 gagaggatc 7712331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 531 - 587
Target Start/End: Original strand, 29844316 - 29844372
Alignment:
Q  531 acttaatggtaggacccattatctattttatgtgtctatctctctccaaatcgtgta 587  Q
    ||||| |||||| ||||| |||||||||||||||||||||||||||||||| |||||    
T  29844316 acttagtggtagaacccactatctattttatgtgtctatctctctccaaattgtgta 29844372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 510 - 581
Target Start/End: Original strand, 989133 - 989204
Alignment:
Q  510 taattaatgatagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaat 581  Q
    |||||||| || || ||||| ||||| |||||||||||| ||| |||||| |||||||||||||||||||||    
T  989133 taattaattatggttggacctacttagtggtaggacccactatatattttttgtgtctatctctctccaaat 989204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 511 - 625
Target Start/End: Original strand, 7373872 - 7373985
Alignment:
Q  511 aattaatgatagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaatcgtgtacttccatttattttatcaaatga 610  Q
    ||||||||||||||||| | ||||||| ||| |||||| | |||||||| |||  |||||||||||||||| |  || | |||||||||||| | || ||    
T  7373872 aattaatgatagtgggatctacttaatagtaagacccactgtctattttttgtacctatctctctccaaattgcata-tcccatttattttaaccaacga 7373970  T
Q  611 agaggatcctaaccc 625  Q
    |||||||| ||||||    
T  7373971 agaggatcttaaccc 7373985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 510 - 579
Target Start/End: Original strand, 7362572 - 7362641
Alignment:
Q  510 taattaatgatagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaa 579  Q
    ||||||||||| |||| ||||| ||| ||||| ||||||  ||||||||| |||||||||||||||||||    
T  7362572 taattaatgatggtggaacccatttagtggtacgacccaccatctattttttgtgtctatctctctccaa 7362641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 510 - 579
Target Start/End: Original strand, 21151156 - 21151225
Alignment:
Q  510 taattaatgatagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaa 579  Q
    ||||||||||| |||||||||||||| |||||||| ||   ||||||||  |||||||||||||||||||    
T  21151156 taattaatgatggtgggacccacttagtggtaggatcctccatctatttcttgtgtctatctctctccaa 21151225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 510 - 579
Target Start/End: Complemental strand, 45260498 - 45260429
Alignment:
Q  510 taattaatgatagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaa 579  Q
    |||||||||||  ||||| ||||||| |||||||| |||  ||||||||| |||||||||||||||||||    
T  45260498 taattaatgatgatgggatccacttagtggtaggatccacaatctattttttgtgtctatctctctccaa 45260429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 510 - 618
Target Start/End: Original strand, 16366522 - 16366630
Alignment:
Q  510 taattaatgatagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaatcgtgtacttccatttattttatcaaatg 609  Q
    ||||||||||| ||||||| |||||| |||||||| |||  ||||||||  | ||||||||||||||||| | |   |  |||||||||||| |||||||    
T  16366522 taattaatgatggtgggacacacttagtggtaggatccaccatctatttcttatgtctatctctctccaacttgcaaaactccatttattttgtcaaatg 16366621  T
Q  610 aagaggatc 618  Q
     ||||||||    
T  16366622 gagaggatc 16366630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 510 - 581
Target Start/End: Complemental strand, 47500354 - 47500282
Alignment:
Q  510 taattaatgatagtgggacccacttaatggtaggacccattatctatt-ttatgtgtctatctctctccaaat 581  Q
    |||||||||||  ||||||||||||| |||| |||||||  ||||||| || |||||||||||||||||||||    
T  47500354 taattaatgatgatgggacccacttagtggttggacccaccatctattcttttgtgtctatctctctccaaat 47500282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 510 - 581
Target Start/End: Original strand, 8149613 - 8149684
Alignment:
Q  510 taattaatgatagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaat 581  Q
    ||||||||||| ||||||||||||||||| || |||||| ||  ||||||| || ||||||||||| |||||    
T  8149613 taattaatgatggtgggacccacttaatgatatgacccactacttattttacgtctctatctctcttcaaat 8149684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 510 - 581
Target Start/End: Original strand, 24193597 - 24193668
Alignment:
Q  510 taattaatgatagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaat 581  Q
    |||||| ||||  ||||| ||| ||||||||| ||| |||| |||||||||||||||||||||||| |||||    
T  24193597 taattactgatgatgggatccatttaatggtaagactcattgtctattttatgtgtctatctctcttcaaat 24193668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 510 - 573
Target Start/End: Original strand, 29631052 - 29631115
Alignment:
Q  510 taattaatgatagtgggacccacttaatggtaggacccattatctattttatgtgtctatctct 573  Q
    |||||||||||||||||||| || || |||| ||||||| ||||||| || |||||||||||||    
T  29631052 taattaatgatagtgggacctacatagtggttggacccactatctatgttttgtgtctatctct 29631115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 526 - 618
Target Start/End: Original strand, 44647984 - 44648076
Alignment:
Q  526 gacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaatcgtgtacttccatttattttatcaaatgaagaggatc 618  Q
    |||||||||| |||| ||| |||  ||||||||| ||||||||||||||||||| | |   |  |||||||||||| ||||||| ||||||||    
T  44647984 gacccacttagtggtcggatccaccatctattttttgtgtctatctctctccaacttgcaaaactccatttattttgtcaaatggagaggatc 44648076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 510 - 573
Target Start/End: Original strand, 30588539 - 30588602
Alignment:
Q  510 taattaatgatagtgggacccacttaatggtaggacccattatctattttatgtgtctatctct 573  Q
    ||||||||||| |||||||||||||| || |||||||| | |  |||||| |||||||||||||    
T  30588539 taattaatgatggtgggacccacttagtgataggacccgtcacttattttttgtgtctatctct 30588602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 522 - 581
Target Start/End: Complemental strand, 46802390 - 46802331
Alignment:
Q  522 gtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaat 581  Q
    |||||||||||||| ||||||||||||   |||||||| | |||||||||||||| ||||    
T  46802390 gtgggacccacttagtggtaggacccaccgtctattttttatgtctatctctctctaaat 46802331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 510 - 579
Target Start/End: Original strand, 18198260 - 18198329
Alignment:
Q  510 taattaatgatagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaa 579  Q
    ||||||||||| ||||||| |||||| ||| || |||||  ||||||||| ||||||||| | |||||||    
T  18198260 taattaatgatggtgggactcacttagtggcagaacccaccatctattttttgtgtctatttatctccaa 18198329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 53; Significance: 5e-21; HSPs: 32)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 510 - 618
Target Start/End: Complemental strand, 19901989 - 19901881
Alignment:
Q  510 taattaatgatagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaatcgtgtacttccatttattttatcaaatg 609  Q
    ||||||||||| |||||||||||||| ||||||||||||  ||||||||| ||||||||||||||||||| | |   |  ||||||||||||| ||||||    
T  19901989 taattaatgatggtgggacccacttagtggtaggacccaccatctattttttgtgtctatctctctccaacttgcaaaactccatttattttaccaaatg 19901890  T
Q  610 aagaggatc 618  Q
     ||||||||    
T  19901889 gagaggatc 19901881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 513 - 618
Target Start/End: Original strand, 23610649 - 23610754
Alignment:
Q  513 ttaatgatagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaatcgtgtacttccatttattttatcaaatgaag 612  Q
    |||||||| |||||||||||||| ||||| ||||||  ||||||||| ||||||||||||||||||| | |   |  |||||||||||||||||||| ||    
T  23610649 ttaatgatggtgggacccacttagtggtatgacccaccatctattttttgtgtctatctctctccaacttgcaaaactccatttattttatcaaatggag 23610748  T
Q  613 aggatc 618  Q
    ||||||    
T  23610749 aggatc 23610754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 510 - 618
Target Start/End: Complemental strand, 5416536 - 5416429
Alignment:
Q  510 taattaatgatagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaatcgtgtacttccatttattttatcaaatg 609  Q
    ||||||||||| |||||||||||||| ||||||||||||  ||||||||| ||||||||||||||||||| | |   |  |||||||||||| |||||||    
T  5416536 taattaatgatggtgggacccacttagtggtaggacccacaatctatttt-tgtgtctatctctctccaacttgcaaaactccatttattttgtcaaatg 5416438  T
Q  610 aagaggatc 618  Q
     ||||||||    
T  5416437 gagaggatc 5416429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 510 - 579
Target Start/End: Complemental strand, 5763233 - 5763164
Alignment:
Q  510 taattaatgatagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaa 579  Q
    ||||||||||| |||||||||||||| ||||||||||||  ||||||||| ||| |||||||||||||||    
T  5763233 taattaatgatggtgggacccacttagtggtaggacccaccatctattttttgtttctatctctctccaa 5763164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 522 - 623
Target Start/End: Original strand, 36532641 - 36532741
Alignment:
Q  522 gtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaatcgtgtacttccatttattttatcaaatgaagaggatccta 621  Q
    |||| ||||||| |||| ||||| ||| ||| ||||||||||||||||||||||| |||| ||| || |||||||||||||||| ||| |||||||| ||    
T  36532641 gtggaacccactgaatgataggatccactatttattttatgtgtctatctctctctaaattgtgaac-tccatttattttatcagatggagaggatctta 36532739  T
Q  622 ac 623  Q
    ||    
T  36532740 ac 36532741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 510 - 579
Target Start/End: Original strand, 56558283 - 56558352
Alignment:
Q  510 taattaatgatagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaa 579  Q
    ||||||||||| |||||||||||||| || |||||||||  ||||||||| |||||||||||||||||||    
T  56558283 taattaatgatggtgggacccacttagtgataggacccaccatctattttttgtgtctatctctctccaa 56558352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 510 - 622
Target Start/End: Original strand, 1871281 - 1871392
Alignment:
Q  510 taattaatgatagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaatcgtgtacttccatttattttatcaaatg 609  Q
    |||||||||||  ||||||||||||| | |||||| ||| ||||||| || | ||||||||||||||||||| |  ||| |||||||||||| ||||||     
T  1871281 taattaatgatgatgggacccacttagtagtaggatccactatctatattttttgtctatctctctccaaattgcatac-tccatttattttgtcaaatt 1871379  T
Q  610 aagaggatcctaa 622  Q
     ||||||||||||    
T  1871380 gagaggatcctaa 1871392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 510 - 625
Target Start/End: Complemental strand, 56453891 - 56453777
Alignment:
Q  510 taattaatgatagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaatcgtgtacttccatttattt-tatcaaat 608  Q
    |||| |||||| ||||||||||||||||| |||||||||  | ||||||| ||||||||||||||||||||| |  | ||||||||||||| ||| ||||    
T  56453891 taatgaatgatggtgggacccacttaatgataggacccaccacctattttttgtgtctatctctctccaaattgcat-cttccatttatttctat-aaat 56453794  T
Q  609 gaagaggatcctaaccc 625  Q
    | |||||||| ||||||    
T  56453793 ggagaggatcttaaccc 56453777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 555 - 626
Target Start/End: Complemental strand, 15178699 - 15178628
Alignment:
Q  555 attttatgtgtctatctctctccaaatcgtgtacttccatttattttatcaaatgaagaggatcctaacccc 626  Q
    ||||||||||| ||||||||| |||||  |||||||||||| ||||||||||||| |||| |||||||||||    
T  15178699 attttatgtgtttatctctcttcaaattatgtacttccattcattttatcaaatggagagaatcctaacccc 15178628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 510 - 581
Target Start/End: Complemental strand, 56269147 - 56269076
Alignment:
Q  510 taattaatgatagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaat 581  Q
    ||||||||||| |||||||||||||| ||||||||||||  |  |||||| |||||||||||||||||||||    
T  56269147 taattaatgatggtgggacccacttagtggtaggacccaccacttattttttgtgtctatctctctccaaat 56269076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 510 - 579
Target Start/End: Complemental strand, 3952241 - 3952172
Alignment:
Q  510 taattaatgatagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaa 579  Q
    ||||||||||| ||| |||||||||| ||||||||||||  ||||||||| | |||||||||||||||||    
T  3952241 taattaatgatggtgagacccacttagtggtaggacccaccatctattttttttgtctatctctctccaa 3952172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 510 - 579
Target Start/End: Original strand, 24073620 - 24073689
Alignment:
Q  510 taattaatgatagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaa 579  Q
    ||||||||||| | |||||||||||| ||||||||||||  ||||||||  |||||||||||||||||||    
T  24073620 taattaatgatggcgggacccacttagtggtaggacccaccatctatttgttgtgtctatctctctccaa 24073689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 510 - 575
Target Start/End: Original strand, 34778425 - 34778490
Alignment:
Q  510 taattaatgatagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctct 575  Q
    ||||||||||| |||||||||||||| |||||||| |||  ||||||||| |||||||||||||||    
T  34778425 taattaatgatggtgggacccacttagtggtaggatccaccatctattttttgtgtctatctctct 34778490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 531 - 617
Target Start/End: Complemental strand, 5815350 - 5815267
Alignment:
Q  531 acttaatggtaggacccattatctattttatgtgtctatctctctccaaatcgtgtacttccatttattttatcaaatgaagaggat 617  Q
    ||||| ||||| |||||||||| ||||||  ||||||||||||||| ||||  |||||| ||||||||||||||||||| |||||||    
T  5815350 acttagtggtatgacccattatatatttt--gtgtctatctctctcaaaattttgtact-ccatttattttatcaaatggagaggat 5815267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 510 - 581
Target Start/End: Original strand, 23474115 - 23474186
Alignment:
Q  510 taattaatgatagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaat 581  Q
    ||||||||||| ||||||  |||| ||| ||||||||||  |||||||||||||||||||||||| ||||||    
T  23474115 taattaatgatggtgggattcactcaatagtaggacccaccatctattttatgtgtctatctctccccaaat 23474186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 510 - 621
Target Start/End: Complemental strand, 42844258 - 42844148
Alignment:
Q  510 taattaatgatagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaatcgtgtacttccatttattttatcaaatg 609  Q
    ||||||||||| | |||| ||| ||||| ||||||| || | |||||||||||||||||||| ||||||||| || ||  || ||||||||||| | |||    
T  42844258 taattaatgatggagggatccatttaatagtaggacacactctctattttatgtgtctatctatctccaaattgt-taactctatttattttataatatg 42844160  T
Q  610 aagaggatccta 621  Q
     |||||||||||    
T  42844159 gagaggatccta 42844148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 510 - 581
Target Start/End: Complemental strand, 48914589 - 48914518
Alignment:
Q  510 taattaatgatagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaat 581  Q
    ||||||||||||| || |||||||| ||| |||||||||  |||||||||||||||| ||||||||| ||||    
T  48914589 taattaatgatagcggaacccactttatgataggacccacaatctattttatgtgtcgatctctctctaaat 48914518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 510 - 576
Target Start/End: Complemental strand, 18207111 - 18207045
Alignment:
Q  510 taattaatgatagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctc 576  Q
    |||||||||||  ||||||||||||| ||||||||||||  ||||||||| | ||||||||||||||    
T  18207111 taattaatgatgatgggacccacttagtggtaggacccaccatctattttttttgtctatctctctc 18207045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 510 - 575
Target Start/End: Original strand, 30567905 - 30567970
Alignment:
Q  510 taattaatgatagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctct 575  Q
    |||||||||||  ||| ||||||||| ||||||||||||  ||||||||| |||||||||||||||    
T  30567905 taattaatgatgatggaacccacttagtggtaggacccaccatctattttttgtgtctatctctct 30567970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 510 - 581
Target Start/End: Original strand, 5524451 - 5524522
Alignment:
Q  510 taattaatgatagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaat 581  Q
    ||||||||||| |||||||||||||| || |||||||||  |  |||||| | |||||||||||||||||||    
T  5524451 taattaatgatggtgggacccacttactgataggacccaccacttattttttatgtctatctctctccaaat 5524522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 510 - 581
Target Start/End: Complemental strand, 36688259 - 36688188
Alignment:
Q  510 taattaatgatagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaat 581  Q
    ||||||||||| |||||||||||||| || |||||| ||  |  |||||| |||||||||||||||||||||    
T  36688259 taattaatgatggtgggacccacttagtgataggactcaacacttattttttgtgtctatctctctccaaat 36688188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 510 - 581
Target Start/End: Complemental strand, 50483627 - 50483556
Alignment:
Q  510 taattaatgatagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaat 581  Q
    |||||||||||| || ||| ||||||||||| ||| | | ||||||||||| |||||||||| |||||||||    
T  50483627 taattaatgataatgtgactcacttaatggtgggatcgaatatctattttacgtgtctatctgtctccaaat 50483556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 510 - 576
Target Start/End: Original strand, 13493276 - 13493342
Alignment:
Q  510 taattaatgatagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctc 576  Q
    ||||||||||||  ||||| |||||| |||| ||| ||| ||||||||||| |||||||||||||||    
T  13493276 taattaatgataaagggactcacttagtggtgggatccactatctattttacgtgtctatctctctc 13493342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 510 - 576
Target Start/End: Complemental strand, 33262623 - 33262557
Alignment:
Q  510 taattaatgatagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctc 576  Q
    ||||||||||| |||||||| | ||| |||||||| |||  ||||||||| ||||||||||||||||    
T  33262623 taattaatgatggtgggacctatttagtggtaggatccaccatctattttttgtgtctatctctctc 33262557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 510 - 579
Target Start/End: Complemental strand, 33247201 - 33247132
Alignment:
Q  510 taattaatgatagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaa 579  Q
    ||||||||||| |||| ||||| ||| |||||| |||||  ||||||||  |||||||||||||||||||    
T  33247201 taattaatgatggtggaacccatttagtggtagaacccaccatctatttcttgtgtctatctctctccaa 33247132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 555 - 620
Target Start/End: Complemental strand, 33841830 - 33841766
Alignment:
Q  555 attttatgtgtctatctctctccaaatcgtgtacttccatttattttatcaaatgaagaggatcct 620  Q
    ||||| ||||||||||||||||||||| || ||| |||||||| |||| |||||| ||||||||||    
T  33841830 attttttgtgtctatctctctccaaattgtatac-tccatttactttaacaaatggagaggatcct 33841766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 523 - 623
Target Start/End: Complemental strand, 47922425 - 47922324
Alignment:
Q  523 tgggacccacttaatggtaggacccattatctatt-ttatgtgtctatctctctccaaatcgtgtacttccatttattttatcaaatgaagaggatccta 621  Q
    ||||||||||||| ||||||||||||  ||||||| || ||||||||| ||||||||||| |   |  || |||||||||| |||||| |||||||| ||    
T  47922425 tgggacccacttagtggtaggacccaccatctattcttttgtgtctatatctctccaaattgcaaaactcaatttattttagcaaatggagaggatctta 47922326  T
Q  622 ac 623  Q
    ||    
T  47922325 ac 47922324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 510 - 546
Target Start/End: Original strand, 46804635 - 46804671
Alignment:
Q  510 taattaatgatagtgggacccacttaatggtaggacc 546  Q
    |||||||||||||| ||||||||||||||||||||||    
T  46804635 taattaatgatagttggacccacttaatggtaggacc 46804671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 510 - 581
Target Start/End: Complemental strand, 1015925 - 1015854
Alignment:
Q  510 taattaatgatagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaat 581  Q
    ||||||||||| ||||||||||| ||||| | |||||||  |  |||||| |||||||||||||||| ||||    
T  1015925 taattaatgatggtgggacccacctaatgatgggacccaccacttattttttgtgtctatctctctctaaat 1015854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 510 - 548
Target Start/End: Complemental strand, 12241479 - 12241441
Alignment:
Q  510 taattaatgatagtgggacccacttaatggtaggaccca 548  Q
    ||||||||||| |||||||||||||| ||||||||||||    
T  12241479 taattaatgatggtgggacccacttagtggtaggaccca 12241441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 510 - 579
Target Start/End: Complemental strand, 12312547 - 12312477
Alignment:
Q  510 taattaatgatagtgggacccacttaatggtaggacccattatcta-ttttatgtgtctatctctctccaa 579  Q
    |||||||||||  ||||||||||||| |||||||| |||  ||||| |||| | |||||||||||||||||    
T  12312547 taattaatgatgatgggacccacttagtggtaggatccaccatctatttttttttgtctatctctctccaa 12312477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 510 - 576
Target Start/End: Complemental strand, 38079791 - 38079725
Alignment:
Q  510 taattaatgatagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctc 576  Q
    ||||||||||| |||| | ||||||| | ||||||||||  ||||||||  ||||||||||||||||    
T  38079791 taattaatgatggtggaatccacttagtagtaggacccaccatctatttcttgtgtctatctctctc 38079725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0250 (Bit Score: 46; Significance: 8e-17; HSPs: 1)
Name: scaffold0250
Description:

Target: scaffold0250; HSP #1
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 510 - 579
Target Start/End: Original strand, 7151 - 7220
Alignment:
Q  510 taattaatgatagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaa 579  Q
    ||||||||||| |||| ||||||||||| ||||||||||  ||||||||| |||||||||||||||||||    
T  7151 taattaatgatggtggaacccacttaatagtaggacccaccatctattttttgtgtctatctctctccaa 7220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0121 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0121
Description:

Target: scaffold0121; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 510 - 581
Target Start/End: Complemental strand, 29640 - 29569
Alignment:
Q  510 taattaatgatagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaat 581  Q
    ||||||||||||||||||| ||| ||||| ||||||| |||| ||||||||||| |||||||||||| ||||    
T  29640 taattaatgatagtgggactcacgtaatgctaggacctattacctattttatgtctctatctctctctaaat 29569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 2)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 510 - 581
Target Start/End: Original strand, 58684 - 58755
Alignment:
Q  510 taattaatgatagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaat 581  Q
    |||||||||||  ||| |||||||||||||||||| ||| |||||||||||| ||| |||||||||||||||    
T  58684 taattaatgatgatggaacccacttaatggtaggatccactatctattttatatgtttatctctctccaaat 58755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 511 - 581
Target Start/End: Original strand, 70796 - 70866
Alignment:
Q  511 aattaatgatagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaat 581  Q
    |||||||||| |||| ||||| ||||||||||||   | |||||||||||| ||| ||||||| |||||||    
T  70796 aattaatgatggtggaacccatttaatggtaggataaactatctattttatatgtttatctctttccaaat 70866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0035 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 510 - 579
Target Start/End: Complemental strand, 16468 - 16399
Alignment:
Q  510 taattaatgatagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaa 579  Q
    |||||||||||  ||||||||||||| ||||||||||||  || |||||| |||||||||||||||||||    
T  16468 taattaatgatgatgggacccacttagtggtaggacccaccatttattttttgtgtctatctctctccaa 16399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 510 - 579
Target Start/End: Original strand, 208067 - 208136
Alignment:
Q  510 taattaatgatagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaa 579  Q
    |||||||||||  ||||||||||||| ||||||||||||  ||||||||| ||||| |||||||||||||    
T  208067 taattaatgatgatgggacccacttagtggtaggacccaccatctattttttgtgtttatctctctccaa 208136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 38; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 510 - 579
Target Start/End: Complemental strand, 9272 - 9203
Alignment:
Q  510 taattaatgatagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaa 579  Q
    ||||||||||| |||| | ||||||| |||| |||||||  ||||||||| |||||||||||||||||||    
T  9272 taattaatgatggtggaatccacttagtggttggacccaccatctattttctgtgtctatctctctccaa 9203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0171 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0171
Description:

Target: scaffold0171; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 510 - 576
Target Start/End: Complemental strand, 17377 - 17311
Alignment:
Q  510 taattaatgatagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctc 576  Q
    ||||||||||| |||||||||||||| || |||||||||  |  |||||| ||||||||||||||||    
T  17377 taattaatgatggtgggacccacttagtgataggacccagcacttattttttgtgtctatctctctc 17311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0126 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0126
Description:

Target: scaffold0126; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 510 - 573
Target Start/End: Complemental strand, 22513 - 22450
Alignment:
Q  510 taattaatgatagtgggacccacttaatggtaggacccattatctattttatgtgtctatctct 573  Q
    |||||||| || |||| || |||||| |||||||| ||| |||||||||| |||||||||||||    
T  22513 taattaattattgtggaactcacttagtggtaggatccactatctattttttgtgtctatctct 22450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University