View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13270_high_6 (Length: 463)
Name: NF13270_high_6
Description: NF13270
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13270_high_6 |
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Alignment Details
Target: chr8 (Bit Score: 433; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 433; E-Value: 0
Query Start/End: Original strand, 17 - 453
Target Start/End: Complemental strand, 936111 - 935675
Alignment:
| Q |
17 |
caatttgcggcgcttgtgaggtggccattggggacagactatgctgttggctaagttcctttaaattccagtagaggacaactaattaaaaacggcaaac |
116 |
Q |
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| T |
936111 |
caatttgcggcgcttgtgaggtggccattggggacagactatgctgttggctaagttcctttaaattccagtagaggacaactaattaaaaacggcaaac |
936012 |
T |
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| Q |
117 |
tgatagaaagacaaatttcataataatgaaaataataacaataaaatcggagaacatgtatataagaaatcataagttacaacaaatttattaacagttt |
216 |
Q |
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| T |
936011 |
tgatagaaagacaaatttcataataatgaaaataataacaataaaatcggagaacatgtatataagaaatcataagttacaacaaatttattaacagttt |
935912 |
T |
|
| Q |
217 |
ggttatttttgttagccaatcaactaaaaccctccaaaataaaagaatgaaaatacctagagcaaattatggaagaaagaaaacgaactcaatgaaactg |
316 |
Q |
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| T |
935911 |
ggttatttttgttagccaatcaactaaaaccctccaaaataaaagaatgaaaatacctagagcaaattatggaagaaagaaaacgaactcaatgaaactg |
935812 |
T |
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| Q |
317 |
tgatcgatgagtaatgaataacggcaacccttgcttgaaccaaaagtctaacaagtatatatataattaccactgatttcatgattaagaatgtaaatat |
416 |
Q |
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| T |
935811 |
tgatcgatgagtaatgaataacggaaacccttgcttgaaccaaaagtctaacaagtatatatataattaccactgatttcatgattaagaatgtaaatat |
935712 |
T |
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| Q |
417 |
gagtaatgtagatgattctatgatgatcaccagaata |
453 |
Q |
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| T |
935711 |
gagtaatgtagatgattctatgatgatcaccagaata |
935675 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 390 - 443
Target Start/End: Complemental strand, 937513 - 937460
Alignment:
| Q |
390 |
tgatttcatgattaagaatgtaaatatgagtaatgtagatgattctatgatgat |
443 |
Q |
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| T |
937513 |
tgatttcatgattaagaatgtaaatataagcaaagtagatgattctatgatgat |
937460 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 387 - 445
Target Start/End: Original strand, 7584254 - 7584312
Alignment:
| Q |
387 |
cactgatttcatgattaagaatgtaaatatgagtaatgtagatgattctatgatgatca |
445 |
Q |
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| T |
7584254 |
cactgatttcatggttaagaatataaatattagtaaagtagatgattatatgatgatca |
7584312 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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