View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13270_high_7 (Length: 451)
Name: NF13270_high_7
Description: NF13270
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13270_high_7 |
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Alignment Details
Target: chr3 (Bit Score: 419; Significance: 0; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 419; E-Value: 0
Query Start/End: Original strand, 11 - 433
Target Start/End: Complemental strand, 24632260 - 24631838
Alignment:
| Q |
11 |
ttatactcatttattttttgcaggaactttaattatgggaaacctctaattttatcctcaaatagttccagcacctatcttttcaaattttattctcatg |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24632260 |
ttatactcatttattttttgcaggaactttaattatgggaaacctctaattttatcctcaaatagttccagcacctatcttttcaaattttattctcatg |
24632161 |
T |
|
| Q |
111 |
ttctaatccatttaaatcaaaaccctgatgaacaagttctagctgacaacaattagcaggactaaaagggacatgagatactagtttttgaaccacaata |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24632160 |
ttctaatccatttaaatcaaaaccctgatgaacaagttctagctgacaacaattagcaggactaaaagggacatgagatactagtttttgaaccacaata |
24632061 |
T |
|
| Q |
211 |
tgataaagccagaaagagagataactcaggaaaaagatccaggagcttgaatgaggtagacagatacaagccacaaatcttctaaatatttcacttacta |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24632060 |
tgataaagccagaaagagagataactcaggaaaaagatccaggagcttgaatgaggtagacagatacaagccacaaatcttctaaatatttcacttacta |
24631961 |
T |
|
| Q |
311 |
atgtttcttctcttccaagtgatatggatttctttttgcaacacaatttatggtctgttttcgattttgtgagattatcccggttatttgattttattag |
410 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24631960 |
atgtttcttctcttccaagtgatatggatttctttttccaacacaatttatggtctgttttcgattttgtgagattatcccggttatttgattttattag |
24631861 |
T |
|
| Q |
411 |
tcccaaagaacaagaggaattaa |
433 |
Q |
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| T |
24631860 |
tcccaaagaacaagaggaattaa |
24631838 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 124 - 308
Target Start/End: Complemental strand, 24685532 - 24685348
Alignment:
| Q |
124 |
aaatcaaaaccctgatgaacaagttctagctgacaacaattagcaggactaaaagggacatgagatactagtttttgaaccacaatatgataaagccaga |
223 |
Q |
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|||| |||||| ||||| | | || |||||||||||||||| || || | |||||| |||||| |||||||||| || ||||| | |||||||| ||||| |
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| T |
24685532 |
aaatgaaaaccttgatggagaggtcctagctgacaacaatttgctggtccaaaaggaacatgacatactagtttctggaccacgagatgataaaaccaga |
24685433 |
T |
|
| Q |
224 |
aagagagataactcaggaaaaagatccaggagcttgaatgaggtagacagatacaagccacaaatcttctaaatatttcacttac |
308 |
Q |
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| ||||| || |||||||||||| | ||||||| || ||||||||||| | | ||||| | |||||||||||| || ||||||| |
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| T |
24685432 |
agcagagagaattcaggaaaaagacctaggagctcgactgaggtagacaaacaaaagccgcgaatcttctaaatgttgcacttac |
24685348 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 352 - 430
Target Start/End: Complemental strand, 24685321 - 24685243
Alignment:
| Q |
352 |
cacaatttatggtctgttttcgattttgtgagattatcccggttatttgattttattagtcccaaagaacaagaggaat |
430 |
Q |
| |
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|||| |||||||| ||| || |||||||||||||| | | |||||||||||||||| ||||| ||||||||||||||| |
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| T |
24685321 |
cacagtttatggtttgtgtttgattttgtgagattcttctggttatttgattttataggtccccaagaacaagaggaat |
24685243 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 11 - 56
Target Start/End: Complemental strand, 24685599 - 24685554
Alignment:
| Q |
11 |
ttatactcatttattttttgcaggaactttaattatgggaaacctc |
56 |
Q |
| |
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||||| ||||||||||||||||||||||||||||||||||| |||| |
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| T |
24685599 |
ttatagtcatttattttttgcaggaactttaattatgggaaccctc |
24685554 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 286 - 319
Target Start/End: Complemental strand, 24653664 - 24653631
Alignment:
| Q |
286 |
aatcttctaaatatttcacttactaatgtttctt |
319 |
Q |
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||||||||||||||||||||||||| |||||||| |
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| T |
24653664 |
aatcttctaaatatttcacttactactgtttctt |
24653631 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 57; Significance: 1e-23; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 236 - 407
Target Start/End: Complemental strand, 41806355 - 41806183
Alignment:
| Q |
236 |
tcaggaaaaagatccaggagcttgaatgaggtagacagatacaagccacaaatcttctaaatatttcacttactaatg-tttcttctcttccaagtgata |
334 |
Q |
| |
|
||||||||||||| |||| |||||||||||| |||| | ||||||| |||||||||||||||||||||||||| || ||| |||||| | |||| | | |
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| T |
41806355 |
tcaggaaaaagatgtaggaacttgaatgaggttgacaaacacaagccgtaaatcttctaaatatttcacttactactgtttttttctctccaaagttaga |
41806256 |
T |
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| Q |
335 |
tggatttctttttgcaacacaatttatggtctgttttcgattttgtgagattatcccggttatttgattttat |
407 |
Q |
| |
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|| ||||| |||| | || | |||||||| ||| || |||||||||||||| ||| ||||||||||||||| |
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| T |
41806255 |
tgcatttccttttcctgcaaagtttatggtttgtgtttgattttgtgagattctccttgttatttgattttat |
41806183 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 143 - 430
Target Start/End: Complemental strand, 41800323 - 41800038
Alignment:
| Q |
143 |
caagttctagctgacaacaattagcaggactaaaagggacatgagatactagtttttgaaccacaatatgataaagccagaaagagagataactcaggaa |
242 |
Q |
| |
|
||||||||||||| ||| |||| ||||| | |||||| || ||| |||||||||| ||||| | || | |||||| | |||| | ||| || ||||||| |
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| T |
41800323 |
caagttctagctgccaagaatttgcaggcccaaaaggaacgtgaaatactagtttctgaactagaagaagataaaacaagaagcacagaaaattcaggaa |
41800224 |
T |
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| Q |
243 |
aaa-gatccaggagcttgaatgaggtagacagatacaagccacaaatcttctaaatatttcacttactaatgtttcttctcttccaagtgatatggattt |
341 |
Q |
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||| ||| ||||||| || |||||||| | | ||||||| |||||||||||||| | |||| || | ||| ||||| | ||||||| || |||| |
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| T |
41800223 |
aaaagatgtaggagctcaaacgaggtagaaaaacacaagccgtgaatcttctaaatatcttactt-ctgttttttattctc--caaagtgatgtgcattt |
41800127 |
T |
|
| Q |
342 |
ctttttgcaacacaatttatggtctgttttcgattttgtgagattatcccggttatttgattttattagtcccaaagaacaagaggaat |
430 |
Q |
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| |||| | |||| |||||||| ||| || |||||||| ||||| ||| |||||||||||||||| ||||| ||||||||| ||||| |
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| T |
41800126 |
ccttttcctgcacagtttatggtttgtgtttgattttgttagattctcctggttatttgattttataggtcccgaagaacaaggggaat |
41800038 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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