View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13270_low_1 (Length: 877)
Name: NF13270_low_1
Description: NF13270
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13270_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 409; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 409; E-Value: 0
Query Start/End: Original strand, 19 - 642
Target Start/End: Original strand, 30853614 - 30854222
Alignment:
| Q |
19 |
gtaatatgtttaatacggacagtacattaaaattaaactcacaaatttatggatagaattagaagaagaagaaatattgttgcattgaaaaaataaattg |
118 |
Q |
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| T |
30853614 |
gtaatatgtttaatacggacagtacattaaaatcaaactcactaatttatggatagaattagaagaagaagaaatattgttgcattgaaaaaataaattg |
30853713 |
T |
|
| Q |
119 |
cagggtaatttataaaaagaaatttatgttgaaatgaagtcggtataattcctagtggagaaattaagtggaataatgatgggctaattgcgggtatca- |
217 |
Q |
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| T |
30853714 |
ctgggtcatttataaaaagaaatttaagttgaaatgaagtcggtataatttctagtggagaaattaagtggaataatgatgggctaattgcgggtatcat |
30853813 |
T |
|
| Q |
218 |
tttttctgttttttacaagtaaaatagaaaactaatagattataatgtcaaataataacatgcacaccaacaaattacggtgaacatagtcgtaacctgt |
317 |
Q |
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||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| | |||||||||||||||||| ||||||||||||| || |
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| T |
30853814 |
tttttctgttttttacatgtaaaatataaaactaatagattataatgtcaaataatgatatgcacaccaacaaattagggtgaacatagtc-------gt |
30853906 |
T |
|
| Q |
318 |
aacctttccagtttctattatagattagaacaattaggtggattccttgaaacgctttctcttgtagtaaagaacaaggaagatgatgattcatggatat |
417 |
Q |
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||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||| | |
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| T |
30853907 |
aaccttttcagtttctattatagattagaacaattaggtggactccttgaaacgctttctcttgtagtaaagaacaaggaagatgataattcatggaca- |
30854005 |
T |
|
| Q |
418 |
tcaaacactcactctacacttgagagataaagaaataaaaagactgnnnnnnnnnnnnnnnnnnnnnngtgatgtatttggaagagaaataaagaataat |
517 |
Q |
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| T |
30854006 |
tcaaacactcactctacacttgagagataaagaaataaaaagattg---------atatgatatatatgtgatgtatttggaagagaaataaagaataat |
30854096 |
T |
|
| Q |
518 |
gaggagttacatgatatcataatccaaagg-nnnnnnnncatacaaaactgcataaaaagtatttgactgcgattttttataatatcaaggatcacaatg |
616 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||| |
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| T |
30854097 |
gaggagttacatgatatcataatccaaaggaaaaaaaaacatacaaaactgcataaaatgtatttgactgcgattttttataatatgaaggatcacaatg |
30854196 |
T |
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| Q |
617 |
tagctgaactcaacatttgactgaga |
642 |
Q |
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|||||||||||||||||||||||||| |
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| T |
30854197 |
tagctgaactcaacatttgactgaga |
30854222 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 83; E-Value: 7e-39
Query Start/End: Original strand, 776 - 858
Target Start/End: Original strand, 30854366 - 30854448
Alignment:
| Q |
776 |
gtttacaaaatgacaagacacatattatggtgatagactaaagctagctgtctaaagattccagcttaatttgtccatgcatg |
858 |
Q |
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| T |
30854366 |
gtttacaaaatgacaagacacatattatggtgatagactaaagctagctgtctaaagattccagcttaatttgtccatgcatg |
30854448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 651 - 698
Target Start/End: Original strand, 30854241 - 30854288
Alignment:
| Q |
651 |
ggtgattgaacaaaatattaaggaggaaaacttgcaagacacaacatg |
698 |
Q |
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||| |||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
30854241 |
ggtaattgaacaaaatattaaggaggaaaacttgcaaggcacaacatg |
30854288 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 794 - 858
Target Start/End: Original strand, 30878581 - 30878647
Alignment:
| Q |
794 |
cacatattatggtgatagactaaagctagctgtctaa--agattccagcttaatttgtccatgcatg |
858 |
Q |
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||||||||||||||||| |||| |||||||| ||||| |||||| ||||||||||||||||||||| |
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| T |
30878581 |
cacatattatggtgataaactagagctagctatctaaagagattctagcttaatttgtccatgcatg |
30878647 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 76; Significance: 1e-34; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 127 - 241
Target Start/End: Complemental strand, 15076727 - 15076612
Alignment:
| Q |
127 |
tttataaaaagaaatttatgttgaaatgaagtcggtataattcctagtggagaaattaagtggaataat-gatgggctaattgcgggtatcatttttctg |
225 |
Q |
| |
|
|||||||||||||||| ||||| ||||||||||||||||||| ||||||||| |||||| ||||||||| ||||| |||||||||||||| ||||||||| |
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| T |
15076727 |
tttataaaaagaaattaatgttcaaatgaagtcggtataatttctagtggagcaattaattggaataatagatggtctaattgcgggtattatttttctg |
15076628 |
T |
|
| Q |
226 |
ttttttacaagtaaaa |
241 |
Q |
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||||||| |||||||| |
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| T |
15076627 |
ttttttataagtaaaa |
15076612 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 782 - 858
Target Start/End: Complemental strand, 15064309 - 15064233
Alignment:
| Q |
782 |
aaaatgacaagacacatattatggtgatagactaaagctagctgtctaaagattccagcttaatttgtccatgcatg |
858 |
Q |
| |
|
|||||||||||||||||||||||| |||| |||| |||||| ||| | |||||| ||||||||||||||||||||| |
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| T |
15064309 |
aaaatgacaagacacatattatggagatatactagagctagttgttgagagattctagcttaatttgtccatgcatg |
15064233 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 326 - 448
Target Start/End: Complemental strand, 15071501 - 15071379
Alignment:
| Q |
326 |
cagtttctattatagattagaacaattaggtggattccttgaaacgctttctcttgtagtaaagaacaaggaagatgatgattcatggatattcaaacac |
425 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||| ||||||| | | ||||| ||| | ||| || ||||| || | ||||||| |
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| T |
15071501 |
cagtttctattatagattagaacaattaggtggactccttgaaacaatttctctcctcggaaagacaaagaaggattataattcaaagacacccaaacac |
15071402 |
T |
|
| Q |
426 |
tcactctacacttgagagataaa |
448 |
Q |
| |
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||| | ||||||||||||||||| |
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| T |
15071401 |
tcattttacacttgagagataaa |
15071379 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 593 - 637
Target Start/End: Complemental strand, 15064511 - 15064467
Alignment:
| Q |
593 |
tttataatatcaaggatcacaatgtagctgaactcaacatttgac |
637 |
Q |
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||||||||||||||||||||||||| | ||||| ||||||||||| |
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| T |
15064511 |
tttataatatcaaggatcacaatgttggtgaacacaacatttgac |
15064467 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 568 - 638
Target Start/End: Complemental strand, 15076361 - 15076292
Alignment:
| Q |
568 |
cataaaaagtatttgactgcgattttttataatatcaaggatcacaatgtagctgaactcaacatttgact |
638 |
Q |
| |
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|||| ||| ||||| | |||||||||| ||||||| |||||||||||||||||| ||| ||| |||||||| |
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| T |
15076361 |
catacaaaatatttaagtgcgatttttcataatattaaggatcacaatgtagctcaacacaa-atttgact |
15076292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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