View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13270_low_11 (Length: 381)
Name: NF13270_low_11
Description: NF13270
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13270_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 345; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 13 - 365
Target Start/End: Complemental strand, 31790535 - 31790183
Alignment:
| Q |
13 |
aatataaccaacagcattcctgcttgaattaagatgaactgacttactcatttttgtgaatcaggatttgaaaatggggatggttcatgctgtggcattg |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31790535 |
aatataaccaacagcattcctgcttgaattaagatgaactgacttactcatttttgtgaatcaggatttgaaaatggggatggttcatgctgtggcattg |
31790436 |
T |
|
| Q |
113 |
caaatatagagcttggtcctctctgtagttctttcaccttgaaagtgtgtaatgatacctctcaatatgtgttctgggacagttaccatcccacagagaa |
212 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31790435 |
caaatatagaacttggtcctctctgtagttctttcaccttgaaagtgtgtaatgatacctctcaatatgtgttctgggacagttaccatcccacagagaa |
31790336 |
T |
|
| Q |
213 |
agcttacaaaatacttgtcaaagaaatcttagataagaagctcgatgagtttgtttgaaaatataattttcctttcaagagtaggacttataccctccag |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31790335 |
agcttacaaaatacttgtcaaagaaatcttagataagaagctcgatgagtttgtttgaaaatataattttcctttcaagagtaggacttataccctccag |
31790236 |
T |
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| Q |
313 |
tgaatctaacgctgagattggaaaaccattaaatatattttaccagtctatga |
365 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
31790235 |
tgaatctaacgctgagattggaaaaccattaaatatattttaccagtttatga |
31790183 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 13 - 365
Target Start/End: Complemental strand, 31785586 - 31785233
Alignment:
| Q |
13 |
aatataaccaacagcattcctgcttgaattaagatgaactgacttactcatttttgtgaatcaggatttgaaaatggggatggttcatgctgtggcattg |
112 |
Q |
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||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
31785586 |
aatattaccaacagcattcctgcttgaattaagattaactgacttactcatttttgtgaatcaggatttgaaaatggggatgcttcatgctgtggcattg |
31785487 |
T |
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| Q |
113 |
caaatatagagcttggtcctctctgtagttctttcaccttgaaagtgtgtaatgatacctctcaatatgtgttctgggacagttaccatcccacagagaa |
212 |
Q |
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|||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
31785486 |
caaatatagaacttggtcctctctgtagttctttcaccttaaaagtgtgtaatgatacctctcaatatgtgttctgggacagttatcatcccacagagaa |
31785387 |
T |
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| Q |
213 |
agcttacaaaatacttgtcaaagaaatcttagataagaagctcgatgagtttgtttgaaaatataattttcctttcaagagtaggacttataccctccag |
312 |
Q |
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|||||||||||||||||| |||||||||||||| |||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
31785386 |
agcttacaaaatacttgttaaagaaatcttagaaaagaagcttgatgagtttgtttgaaaatataattttcctttctagagtaggacttataccctccag |
31785287 |
T |
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| Q |
313 |
tgaatctaacgctgagattggaaaaccattaaatatat-tttaccagtctatga |
365 |
Q |
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|||||||||||||||||||||||||||||||||||| | ||||||||||||||| |
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| T |
31785286 |
tgaatctaacgctgagattggaaaaccattaaatatttgtttaccagtctatga |
31785233 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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