View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13270_low_14 (Length: 325)
Name: NF13270_low_14
Description: NF13270
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13270_low_14 |
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Alignment Details
Target: chr7 (Bit Score: 231; Significance: 1e-127; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 68 - 310
Target Start/End: Original strand, 31296253 - 31296495
Alignment:
| Q |
68 |
atcttatggctgatgttgtagttgaagaggagtatagcaaattggatgctagaaatattgctatggtttttgctccaaatatgactcaggtatgcttatg |
167 |
Q |
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| T |
31296253 |
atcttatggctgatgttgtagttgaagaggagtataacaaattgaatgctataaatattgctatggtttttgctccaaatatgactcaggtatgcttatg |
31296352 |
T |
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| Q |
168 |
tgcttgcactttttgtgtatataaatcatgtatcccctgcaagaaatcacagagaacctgtagaagataatttaaaagaaaacaacaatgtttcataaga |
267 |
Q |
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| T |
31296353 |
tgcttgcactttttgtgtatataaatcatgtatcccctgcaagaaatcacagagaacctgtagaagataatttaaaagaaaacaacaatgtttcataaga |
31296452 |
T |
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| Q |
268 |
gtgatagagattatcaaatttgacttgcaaattagatttaagt |
310 |
Q |
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| T |
31296453 |
gtgatagagattatcaaatttgacttgcaaattagatttaagt |
31296495 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 68 - 183
Target Start/End: Original strand, 43876650 - 43876765
Alignment:
| Q |
68 |
atcttatggctgatgttgtagttgaagaggagtatagcaaattggatgctagaaatattgctatggtttttgctccaaatatgactcaggtatgcttatg |
167 |
Q |
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| T |
43876650 |
atcttatggctgatgttgtagttgaagaggagtgtaacaaaatggatgctagaaatattgctatggtttttgctccaaatatgactcaggtatgcttatg |
43876749 |
T |
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| Q |
168 |
tgcttgcactttttgt |
183 |
Q |
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| T |
43876750 |
tgattgcactttttgt |
43876765 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 21 - 68
Target Start/End: Original strand, 31296183 - 31296230
Alignment:
| Q |
21 |
gaagaagaatttgttgagcttgtgaagcagctgaaaccagttgaatca |
68 |
Q |
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| T |
31296183 |
gaagaagaatttgttgagcttgtgaagctgctgaaaccagttgaatca |
31296230 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 21 - 68
Target Start/End: Original strand, 43876580 - 43876627
Alignment:
| Q |
21 |
gaagaagaatttgttgagcttgtgaagcagctgaaaccagttgaatca |
68 |
Q |
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| T |
43876580 |
gaagaagaatctgttgagcttgtgaagcagctgaaaccagttgaatca |
43876627 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 51; Significance: 3e-20; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 223 - 301
Target Start/End: Original strand, 3198266 - 3198344
Alignment:
| Q |
223 |
acctgtagaagataatttaaaagaaaacaacaatgtttcataagagtgatagagattatcaaatttgacttgcaaatta |
301 |
Q |
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| T |
3198266 |
acctggagaagataattaaaaagaagacagcaatgtttcataagactgatagaaattatcaaatttgatttgcaaatta |
3198344 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 229 - 303
Target Start/End: Original strand, 3197961 - 3198034
Alignment:
| Q |
229 |
agaagataatttaaaagaaaacaacaatgtttcataagagtgatagagattatcaaatttgacttgcaaattaga |
303 |
Q |
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| T |
3197961 |
agaagttaatttaaaagaagacaacaatgttgcagaagagtgatcaaaattatc-aatttgatttgcaaattaga |
3198034 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 218 - 303
Target Start/End: Original strand, 3198558 - 3198643
Alignment:
| Q |
218 |
agagaacctgtagaagataatttaaaagaaaacaacaatgtttcataagagtgatagagattatcaaatttgacttgcaaattaga |
303 |
Q |
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| T |
3198558 |
agagtacctgaagaagacaatttaaaagaacacaacaatgtttcagaacagtaatcaaaattatcaaatttgatttgaaaagtaga |
3198643 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 230 - 303
Target Start/End: Original strand, 3198867 - 3198940
Alignment:
| Q |
230 |
gaagataatttaaaagaaaacaacaatgtttcataagagtgatagagattatcaaatttgacttgcaaattaga |
303 |
Q |
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| T |
3198867 |
gaagataagttagaagaagacaacaatatttcagaagagtgatcaaaattatcaaatttgatttgcaaactaga |
3198940 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 68 - 159
Target Start/End: Complemental strand, 39991149 - 39991058
Alignment:
| Q |
68 |
atcttatggctgatgttgtagttgaagaggagtatagcaaattggatgctagaaatattgctatggtttttgctccaaatatgactcaggta |
159 |
Q |
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| T |
39991149 |
atctcatggctgatgttgtccaagaggaggagtttaacaaaatgaatgcaagaaacattgccatggtttttgctccaaacatgactcaggta |
39991058 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 17 - 59
Target Start/End: Complemental strand, 39991223 - 39991181
Alignment:
| Q |
17 |
cacagaagaagaatttgttgagcttgtgaagcagctgaaacca |
59 |
Q |
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| T |
39991223 |
cacagaagaagaatctattgagcttgtgaagcagctaaaacca |
39991181 |
T |
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