View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13270_low_16 (Length: 295)
Name: NF13270_low_16
Description: NF13270
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13270_low_16 |
 | |
|
| [»] scaffold0012 (1 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 10 - 279
Target Start/End: Original strand, 5924297 - 5924565
Alignment:
| Q |
10 |
acatcatcactatacctaacctcatgaacagacatagcttctccaaaactcccactcaacttcctcacattcgaaggctcaacctcgtaaaaaaccggcc |
109 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
5924297 |
acatcatcactatacctaacctcatgaacagccatagcttctccaaaactcccactcaacttcctcacattcgaaggctcaacctcataaaaaaccggcc |
5924396 |
T |
|
| Q |
110 |
aaaccaaacccccatttttcaagaatcttacaaagctcttgtaaacaaaaagacgaagacgcatagtttttggatagcacaacaatggcaattcttgaat |
209 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5924397 |
aaaccaaacccccatttt-caagaatcttacaaagctcttgtaaacaaaaagacgaagacgcatagtttttggatagcacaacaatggcaattcttgaat |
5924495 |
T |
|
| Q |
210 |
tttcaatagctttgagaagtgagggtgtgatttggtcacctttttgaagatgatcgtcgtcgatgaaggt |
279 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5924496 |
tttcaatagctttgagaagtgagggtgtgatttggtcacctttttgaagatgatcgtcgtcgatgaaggt |
5924565 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 128 - 276
Target Start/End: Original strand, 28491577 - 28491725
Alignment:
| Q |
128 |
tcaagaatcttacaaagctcttgtaaacaaaaagacgaagacgcatagtttttggatagcacaacaatggcaattcttgaattttcaatagctttgagaa |
227 |
Q |
| |
|
||||| |||||| |||| |||| ||| ||||| || ||||| ||||| || ||||| || ||||| ||||| || | ||||||||||| ||||||| | |
|
|
| T |
28491577 |
tcaaggatcttagaaagttcttttaagcaaaaggaagaagaagcataattcttggaaagaacaacgatggccatgttggaattttcaatggctttgatga |
28491676 |
T |
|
| Q |
228 |
gtgagggtgtgatttggtcacctttttgaagatgatcgtcgtcgatgaa |
276 |
Q |
| |
|
|||| |||||||||| |||||||||||||| | |||||||| ||||| |
|
|
| T |
28491677 |
gtgatggtgtgatttcttcacctttttgaagctcctcgtcgtccatgaa |
28491725 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 128 - 276
Target Start/End: Original strand, 29803987 - 29804135
Alignment:
| Q |
128 |
tcaagaatcttacaaagctcttgtaaacaaaaagacgaagacgcatagtttttggatagcacaacaatggcaattcttgaattttcaatagctttgagaa |
227 |
Q |
| |
|
||||| |||||| |||| |||| ||| ||||| || ||||| ||||| || ||||| || ||||| ||||| || | ||||||||||| ||||||| | |
|
|
| T |
29803987 |
tcaaggatcttagaaagttcttttaagcaaaaggaagaagaagcataattcttggaaagaacaacgatggccatgttggaattttcaatggctttgatga |
29804086 |
T |
|
| Q |
228 |
gtgagggtgtgatttggtcacctttttgaagatgatcgtcgtcgatgaa |
276 |
Q |
| |
|
|||| |||||||||| |||||||||||||| | |||||||| ||||| |
|
|
| T |
29804087 |
gtgatggtgtgatttcttcacctttttgaagctcctcgtcgtccatgaa |
29804135 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 151 - 216
Target Start/End: Complemental strand, 26617426 - 26617361
Alignment:
| Q |
151 |
taaacaaaaagacgaagacgcatagtttttggatagcacaacaatggcaattcttgaattttcaat |
216 |
Q |
| |
|
||||||||| || ||||| ||||||| ||| || | |||||||||||||||||||| |||||||| |
|
|
| T |
26617426 |
taaacaaaatgaagaagaagcatagtctttagagaagacaacaatggcaattcttgagttttcaat |
26617361 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 151 - 216
Target Start/End: Complemental strand, 26723354 - 26723289
Alignment:
| Q |
151 |
taaacaaaaagacgaagacgcatagtttttggatagcacaacaatggcaattcttgaattttcaat |
216 |
Q |
| |
|
||||||||| || ||||| ||||||| ||| || | |||||||||||||||||||| |||||||| |
|
|
| T |
26723354 |
taaacaaaatgaagaagaagcatagtctttagagaagacaacaatggcaattcttgagttttcaat |
26723289 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 128 - 242
Target Start/End: Complemental strand, 12588576 - 12588462
Alignment:
| Q |
128 |
tcaagaatcttacaaagctcttgtaaacaaaaagacgaagacgcatagtttttggatagcacaacaatggcaattcttgaattttcaatagctttgagaa |
227 |
Q |
| |
|
||||| ||||| ||||||||||||| ||||| || ||||| ||||| || || || || ||||| ||||| || | || | |||||| |||||||||| |
|
|
| T |
12588576 |
tcaaggatctttgaaagctcttgtaagcaaaaggaggaagaagcataattcttagagaggacaacgatggccatcttggagtcttcaattgctttgagaa |
12588477 |
T |
|
| Q |
228 |
gtgagggtgtgattt |
242 |
Q |
| |
|
|||| |||||||||| |
|
|
| T |
12588476 |
gtgatggtgtgattt |
12588462 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0012 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0012
Description:
Target: scaffold0012; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 128 - 253
Target Start/End: Original strand, 241738 - 241863
Alignment:
| Q |
128 |
tcaagaatcttacaaagctcttgtaaacaaaaagacgaagacgcatagtttttggatagcacaacaatggcaattcttgaattttcaatagctttgagaa |
227 |
Q |
| |
|
||||| ||||| |||| |||||||| ||||| || || || ||||| || || || || ||||||||||| || | || | |||||| |||||||||| |
|
|
| T |
241738 |
tcaagtatctttgaaagttcttgtaagcaaaaggaggaggaagcataattcttagagaggacaacaatggccatcatggagtcttcaattgctttgagaa |
241837 |
T |
|
| Q |
228 |
gtgagggtgtgatttggtcacctttt |
253 |
Q |
| |
|
|||| |||||||||| ||||||||| |
|
|
| T |
241838 |
gtgatggtgtgatttcttcacctttt |
241863 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 146 - 242
Target Start/End: Complemental strand, 613293 - 613197
Alignment:
| Q |
146 |
tcttgtaaacaaaaagacgaagacgcatagtttttggatagcacaacaatggcaattcttgaattttcaatagctttgagaagtgagggtgtgattt |
242 |
Q |
| |
|
|||||||| |||||||| ||||| |||||||| || || || |||| |||||| || | || | |||||| |||||||||||||| ||||| |||| |
|
|
| T |
613293 |
tcttgtaagcaaaaagaggaagaagcatagttcttagagagaacaataatggccatcatagagtcttcaattgctttgagaagtgatggtgtaattt |
613197 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University