View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13270_low_18 (Length: 249)
Name: NF13270_low_18
Description: NF13270
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13270_low_18 |
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Alignment Details
Target: chr5 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 34437054 - 34437295
Alignment:
| Q |
1 |
cctcttgtgatgtcttgttgatcatctgaagtatcataggccaaacctctccatttgtctttgtcagtttgcttgctttcatcaatctcagcagcaacaa |
100 |
Q |
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| T |
34437054 |
cctcttgtgatgtcttgttgatcatctgaagtatcataggccaaacctctccatctgtctttgtcagtttgcttgctttcattaatctcagcagcaacaa |
34437153 |
T |
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| Q |
101 |
ttttgaatcttccagatgaaacctttgtgtttggtaacctcgaggtaactttctttaagctggttccaaagaatgatgaatttggaactgaagctactgc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
34437154 |
ttttgaatcttccagatgaaacctttgtgtttggtaacctcgaggtaactttctttaagctggttccaaagaatgatgaacttggaactgaagctactgc |
34437253 |
T |
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| Q |
201 |
tccagagctattcaaactcaactgcaatatcacagtattatc |
242 |
Q |
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| T |
34437254 |
tccagagctattcaaactcaactgcaatatcacagtattatc |
34437295 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 134
Target Start/End: Original strand, 30666982 - 30667115
Alignment:
| Q |
1 |
cctcttgtgatgtcttgttgatcatctgaagtatcataggccaaacctctccatttgtctttgtcagtttgcttgctttcatcaatctcagcagcaacaa |
100 |
Q |
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|||||||||||||||||||| |||||||| |||||||||||||||| |||||| ||||| ||| || || || | ||||| ||||| ||||| || |
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| T |
30666982 |
cctcttgtgatgtcttgttggtcatctgatatatcataggccaaacccctccatctgtctccgtcggtctgtttaccctcatcgatctctttagcaaaaa |
30667081 |
T |
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| Q |
101 |
ttttgaatcttccagatgaaacctttgtgtttgg |
134 |
Q |
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|||||| ||||| || ||||| ||||||||||| |
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| T |
30667082 |
ctttgaagcttcctgaggaaacttttgtgtttgg |
30667115 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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