View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13270_low_19 (Length: 249)
Name: NF13270_low_19
Description: NF13270
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13270_low_19 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 169; Significance: 9e-91; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 34 - 249
Target Start/End: Original strand, 3092625 - 3092846
Alignment:
| Q |
34 |
tcatttagcaatttgtttgatctgcaatgaaaattaaagtcaacaaaaatat--tattagataatacataaatatataatacaatttcaattttacatta |
131 |
Q |
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| T |
3092625 |
tcatttagcaatttgtttgatctgcaatgaaaattaaagtcaacaaaaatatattattagataatacataaatatataatacaatttcaattttacatta |
3092724 |
T |
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| Q |
132 |
actaaaagttaagaataaaagatttgaccgataaaaaattaaatgagggttagaaataacaaacgtgttaagg----nnnnnnngcttataacattcaaa |
227 |
Q |
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| T |
3092725 |
actaaaagttaagaataaaagatttgaccgataaaaaattaaatgagggttagaaataacaaatgtgttaaggaaaaaattaaagcttataacattcaaa |
3092824 |
T |
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| Q |
228 |
ctacttcataaatttgaatttg |
249 |
Q |
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|||||||||||||||||||||| |
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| T |
3092825 |
ctacttcataaatttgaatttg |
3092846 |
T |
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