View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13270_low_4 (Length: 592)
Name: NF13270_low_4
Description: NF13270
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13270_low_4 |
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Alignment Details
Target: chr6 (Bit Score: 366; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 10 - 576
Target Start/End: Original strand, 3092843 - 3093406
Alignment:
| Q |
10 |
tttgatgcaacaaggaacctaaggaaaactagaggttggttaaagtgagactagattgtggagaatagggtagaaagacaaccagtgacacactttatga |
109 |
Q |
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| T |
3092843 |
tttgatgcaacaaggaacctaaggaaaactagaagttggttaaagtgagactagattgtggagaatagggtagaaagacaaccagtgacacacttcatga |
3092942 |
T |
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| Q |
110 |
aattgaaaaatataaaaatgcactaaatagaaacaatagagatcgaaagtatgaaagtttgtagtgaaaaatatgtctaacatctttttaagttggatct |
209 |
Q |
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| T |
3092943 |
aattgaaaaatataaaaatgcactaaatagaaacaatagagatcgaaagtatgaaagtttgtagtgaaaaatatgtctaacatc-ttttaagttggatct |
3093041 |
T |
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| Q |
210 |
cttttttcatattgatannnnnnnnnnnaaactcggcatccggcggcccaacccaagaacctgttattgctatctgaggagttcaatcttatcatccgct |
309 |
Q |
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| T |
3093042 |
cttttttcatattgat-tttttttttttaaactcggcatc---cgacccaacccaagaacctgt------tttatgaggagttcaatcttatcatccgct |
3093131 |
T |
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| Q |
310 |
taagtggactcatttaaagtcggaggacgannnnnnnnnnnngaactactagctcaccaaaattgtttcagattgatctcttaatttttatatggattct |
409 |
Q |
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| T |
3093132 |
taagtggactcgtttaaagtcggaggatga--atatatatatgaactattagctcaccaaaattgtttcagattgatctcttaatttttatatggattct |
3093229 |
T |
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| Q |
410 |
ttgaatcgaaaaattcgtgttggtttgtggggacattagacaatgcttaaacatcatttgatgttatgttgtgtatgaggataaaaccctaaaccttctt |
509 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
3093230 |
ttgaatcaaaaaattcgtgttggtttgtggggacattagacaatgcttaaacatcatttgatattatgttgtgtatgaggataaaaccctaaaccttctt |
3093329 |
T |
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| Q |
510 |
att-----gtgtcagtccttagc-----tgaaggtgttaatgaaggacacatcatgtgagaaatttactcatgaaac |
576 |
Q |
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| T |
3093330 |
attgtgtcgtgtcagtccttaactacagtgaaggtgttaatgaaggacacatcatgtgagaaatttactcatgaaac |
3093406 |
T |
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