View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13270_low_5 (Length: 550)
Name: NF13270_low_5
Description: NF13270
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13270_low_5 |
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| [»] chr8 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 502; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 502; E-Value: 0
Query Start/End: Original strand, 1 - 550
Target Start/End: Complemental strand, 31791113 - 31790564
Alignment:
| Q |
1 |
accacattttaattaacaatgtttccattggttaagaggtggacaataacaccctatatattagaaaagttcatgttttgatggaaatgtcatgaaattg |
100 |
Q |
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| T |
31791113 |
accacattttaattaacaatgtttccattggttaagaggtggtcaataacaccctatatattagaaaagttcatgttttgatggaaatatcatgaaattg |
31791014 |
T |
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| Q |
101 |
aatgatgaaggatctttatctgttgggagcaagaaggattggaatattcagtttatcaccaataggatgtgtgccactgcaaagaaccataaaaggaggc |
200 |
Q |
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| T |
31791013 |
aatgatgaaggatctttatctattgggagcaagaaggattggaatattcagtttatcaccaataggatgtgtgccactgcaaagaaccataaaaggaggc |
31790914 |
T |
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| Q |
201 |
ctatcaagggaatgtgtagagattttaaatgagggagcattgatctataacgccaagctttccacttcaattttagatttagcaagaaaacttccagatt |
300 |
Q |
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| T |
31790913 |
ctatcaagggaatgtgtagagattttaaatgagggagcattgatctataacgccaagctttccacttcaattttagatttagcaagaaaacttccagatt |
31790814 |
T |
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| Q |
301 |
caaggcttgtctaccttgaaaactttagtcaattgcatgacattatcataaaccacaatgactatggtaagtatctcaagttcatactctttaggttctc |
400 |
Q |
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| T |
31790813 |
caaggcttgtctaccttgagaactttagtcaattgcatgacattatcataaaccacaatgactatggtaagtatctcaagttcatactctttaggttctc |
31790714 |
T |
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| Q |
401 |
tcaccacagctaaatttcatggcatgaagcttatatatttcctaattcaacttaaataagtgtgtttcaggcgatacttttcaccttgtctatagacccc |
500 |
Q |
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| T |
31790713 |
tcaccacagctaaatttcatggcatgacgcttatatatttcctaattcaacttaaataagtgtgtttcaggcgatacttgtcgccttgtctatagaccca |
31790614 |
T |
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| Q |
501 |
aaaaatattcatttacatgttgccttaaacattgtcttatttttattata |
550 |
Q |
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| T |
31790613 |
aaaaatattcatttacatgatgccttaacaagtgtcttatttttattata |
31790564 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 76 - 449
Target Start/End: Complemental strand, 31786619 - 31786245
Alignment:
| Q |
76 |
ttttgatggaaatgtcatgaaattgaatgatgaaggatctttatctgttgggagcaagaaggattggaatattcagtttatcaccaataggatgtgtgcc |
175 |
Q |
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|||||||||||||||||||||| | | |||||||||||||||||| |||||||||||||| |||||||||||||||||||||||| ||||||||||||| |
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| T |
31786619 |
ttttgatggaaatgtcatgaaacttcacgatgaaggatctttatctattgggagcaagaagaattggaatattcagtttatcaccagtaggatgtgtgcc |
31786520 |
T |
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| Q |
176 |
actgcaaagaaccataaaaggaggcctatcaagggaatgtgtagagattttaaatgagggagcattgatctataacgccaagctttccacttcaatttta |
275 |
Q |
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| T |
31786519 |
attccaaagaactgtaaaaggaggcctattaagggaatgtgtagagattgtaaatgagggagcattgatctttaactccaagctttcctcttccattata |
31786420 |
T |
|
| Q |
276 |
gatttagcaagaaaacttccagattcaaggcttgtctaccttgaaaactttagtcaattgcatgacattatcataaaccacaatgactatggtaagtatc |
375 |
Q |
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||| |||||| ||||| ||||||||| ||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
31786419 |
gatctagcaaaaaaacatccagattccaggcttgtctaccttgagaactttagtcaactgcatgacattatcataaaccacaatgactatggtaagtatc |
31786320 |
T |
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| Q |
376 |
tcaagttcatactctttaggttctctcaccacagctaaatttcatggcatgaagcttata-tatttcctaattca |
449 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||| |||| |
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| T |
31786319 |
tcaagttcatactctttaggttctctcaccacagataaatttcatggcatgaagcttatattatttcctacttca |
31786245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 494 - 550
Target Start/End: Complemental strand, 31785671 - 31785615
Alignment:
| Q |
494 |
agaccccaaaaatattcatttacatgttgccttaaacattgtcttatttttattata |
550 |
Q |
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|||||||||||| ||||||||||||| |||||||| | |||||||||||||||||| |
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| T |
31785671 |
agaccccaaaaaaattcatttacatgatgccttaacaagtgtcttatttttattata |
31785615 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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