View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13271_high_11 (Length: 361)
Name: NF13271_high_11
Description: NF13271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13271_high_11 |
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Alignment Details
Target: chr7 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 9 - 347
Target Start/End: Complemental strand, 10487323 - 10486985
Alignment:
| Q |
9 |
agcaaaggagcttcggtataggtatgcgcattcggaattcccatgttaaagcataaacaaaatggtatgatggtgttcctcccccatcagcaggaacgga |
108 |
Q |
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| T |
10487323 |
agcaaaggagcttcggtataggtatgtgcattcgagattcccatggtaaagcatcaacaaaatggtatgatggtgttcctcccccatcagcagggatgga |
10487224 |
T |
|
| Q |
109 |
tctatgtagtggatattgtgggcatgtgcctactctatgttttgaagannnnnnnnngcaaggggtattatatactatatgttaacattttgaccaacat |
208 |
Q |
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| T |
10487223 |
tctatgtagtgtatattgtgggcatgtgcctactctatgttttgaagaaatttttttccaaggggtatcatatactatatgttaacattttgaccaacat |
10487124 |
T |
|
| Q |
209 |
ggcccacattcatcacacaatataaacactacaaattgcttatccaacatgaaatgcctatttaaagaaagnnnnnnnggttaaatatttgtttaataac |
308 |
Q |
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| T |
10487123 |
ggcccacattcatcacacaatataaacactacaaattgcttatccaacatgaaatgcctatttaaagaaagaaaaaaaggttaaataattgtttaataac |
10487024 |
T |
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| Q |
309 |
caacgattgtattactatcattcatcacaaacatttttt |
347 |
Q |
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| T |
10487023 |
caacgattgtattactatcattcatcacaaacatttttt |
10486985 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 192 - 258
Target Start/End: Complemental strand, 34225244 - 34225178
Alignment:
| Q |
192 |
aacattttgaccaacatggcccacattcatcacacaatataaacactacaaattgcttatccaacat |
258 |
Q |
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| T |
34225244 |
aacattttgaccaacatgacccacactcatcacacagtataaactctacaaattgcttatccaacat |
34225178 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 56 - 98
Target Start/End: Complemental strand, 19023603 - 19023561
Alignment:
| Q |
56 |
aaagcataaacaaaatggtatgatggtgttcctcccccatcag |
98 |
Q |
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||||||| |||||||| ||||||||||||| |||||||||||| |
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| T |
19023603 |
aaagcatcaacaaaatagtatgatggtgttgctcccccatcag |
19023561 |
T |
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