View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13271_high_14 (Length: 288)
Name: NF13271_high_14
Description: NF13271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13271_high_14 |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 239; Significance: 1e-132; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 1 - 288
Target Start/End: Original strand, 7202178 - 7202473
Alignment:
| Q |
1 |
agaaaaactacaaatgaaagaaagtgaacaataatttaactaaattaatcttactattaagtattgaaaattaaaaatgatattggctctattccattat |
100 |
Q |
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| T |
7202178 |
agaaaaactacaaatgaaagaaagtgaacaataatttaactaaattaatcttactattaagtattgaaaattaaaaatgatattggctctattccattat |
7202277 |
T |
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| Q |
101 |
aaatgtcctcggtgaaaatttgaatagcttctctttctgaggcac--------atgagctgactgatttatttgtagagnnnnnnnntaaaagcaaatct |
192 |
Q |
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| T |
7202278 |
aaatgtcctcggtgaaaatttgaatagcttctctttctgaggcacatgagcagatgagctgactgatttatttgtagaaaaaataaataaaagcaaatct |
7202377 |
T |
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| Q |
193 |
tgaagaatataacaaaacaagcatcaatgcaactctgtccataccatatgcaaacacagccaacgtaatatctgatatacaatgtgcattcatctc |
288 |
Q |
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| T |
7202378 |
tgaagaatataacaaaacaagcatcaatgcaactctgtccataccatatgcaaacacagccaacgtaatatctgatatacaatgtgcattcatctc |
7202473 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 181 - 287
Target Start/End: Original strand, 7191100 - 7191208
Alignment:
| Q |
181 |
aaaagcaaatcttgaagaatataacaaaacaagcatcaatgcaactctgtccataccatatgcaaacacagccaacgta--atatctgatatacaatgtg |
278 |
Q |
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| T |
7191100 |
aaaaacaaatcttgaagaatataaccaaacaagcatcaatgtaactctgtccataccatatgctatcacaggcaacgaaatatatctgatatacaatgtg |
7191199 |
T |
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| Q |
279 |
cattcatct |
287 |
Q |
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| T |
7191200 |
cattcatct |
7191208 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 127 - 162
Target Start/End: Original strand, 7191041 - 7191076
Alignment:
| Q |
127 |
gcttctctttctgaggcacatgagctgactgattta |
162 |
Q |
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| T |
7191041 |
gcttctctttctgaggcacatgagctgactgattta |
7191076 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 218 - 265
Target Start/End: Original strand, 26286656 - 26286703
Alignment:
| Q |
218 |
aatgcaactctgtccataccatatgcaaacacagccaacgtaatatct |
265 |
Q |
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| T |
26286656 |
aatgcaattctgtccataccatatggaaacacaaccaacgaaatatct |
26286703 |
T |
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