View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13271_high_15 (Length: 249)
Name: NF13271_high_15
Description: NF13271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13271_high_15 |
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| [»] scaffold0536 (3 HSPs) |
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Alignment Details
Target: scaffold0536 (Bit Score: 52; Significance: 6e-21; HSPs: 3)
Name: scaffold0536
Description:
Target: scaffold0536; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 18 - 69
Target Start/End: Original strand, 9501 - 9552
Alignment:
| Q |
18 |
caccagtcgtagatgagggcatgttggacattaaaagcaatataaagcagaa |
69 |
Q |
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| T |
9501 |
caccagtcgtagatgagggcatgttggacattaaaagcaatataaagcagaa |
9552 |
T |
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Target: scaffold0536; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 192 - 248
Target Start/End: Original strand, 5537 - 5593
Alignment:
| Q |
192 |
atggatatggaaaaaggagaagagaaagcaattaaaatctacttcataccttactta |
248 |
Q |
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| T |
5537 |
atggatatggaagaaggagaagagaaagcacttactatctacttcataccttactta |
5593 |
T |
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Target: scaffold0536; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 208 - 249
Target Start/End: Original strand, 9553 - 9594
Alignment:
| Q |
208 |
gagaagagaaagcaattaaaatctacttcataccttacttat |
249 |
Q |
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| T |
9553 |
gagaagagaaagcacttaaaatctacttcataccttacttat |
9594 |
T |
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Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 200 - 248
Target Start/End: Original strand, 48911379 - 48911427
Alignment:
| Q |
200 |
ggaaaaaggagaagagaaagcaattaaaatctacttcataccttactta |
248 |
Q |
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| T |
48911379 |
ggaagaaggagaagagaaagcacttaccatctacttcataccttactta |
48911427 |
T |
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