View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13271_high_3 (Length: 1051)

Name: NF13271_high_3
Description: NF13271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13271_high_3
NF13271_high_3
[»] chr6 (5 HSPs)
chr6 (164-1042)||(2385918-2386795)
chr6 (820-868)||(24333044-24333092)
chr6 (821-862)||(3525236-3525277)
chr6 (823-864)||(4308887-4308928)
chr6 (823-860)||(31776191-31776228)
[»] chr5 (4 HSPs)
chr5 (115-164)||(5770876-5770925)
chr5 (825-872)||(18286893-18286940)
chr5 (822-864)||(3280654-3280696)
chr5 (821-862)||(32197845-32197886)
[»] chr2 (6 HSPs)
chr2 (822-864)||(37276854-37276896)
chr2 (823-864)||(37419586-37419627)
chr2 (822-864)||(1830149-1830191)
chr2 (822-868)||(15370241-15370287)
chr2 (824-861)||(40059381-40059418)
chr2 (824-861)||(40085281-40085318)
[»] chr4 (8 HSPs)
chr4 (821-854)||(28615454-28615487)
chr4 (821-864)||(679401-679444)
chr4 (821-868)||(41433481-41433528)
chr4 (823-866)||(53034718-53034761)
chr4 (822-864)||(22662169-22662211)
chr4 (822-864)||(22666648-22666690)
chr4 (821-862)||(27043747-27043788)
chr4 (823-856)||(52428782-52428815)
[»] chr3 (4 HSPs)
chr3 (821-862)||(25447162-25447203)
chr3 (821-862)||(36507009-36507050)
chr3 (821-863)||(47903997-47904039)
chr3 (825-862)||(26911703-26911740)
[»] chr8 (2 HSPs)
chr8 (825-868)||(39551130-39551173)
chr8 (821-854)||(10727464-10727497)
[»] chr7 (4 HSPs)
chr7 (821-868)||(28691753-28691800)
chr7 (821-868)||(41040271-41040318)
chr7 (825-862)||(9210933-9210970)
chr7 (821-862)||(37064385-37064426)
[»] chr1 (4 HSPs)
chr1 (829-868)||(4200340-4200379)
chr1 (822-872)||(37241739-37241788)
chr1 (823-864)||(6292602-6292643)
chr1 (821-854)||(30013996-30014029)


Alignment Details
Target: chr6 (Bit Score: 827; Significance: 0; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 827; E-Value: 0
Query Start/End: Original strand, 164 - 1042
Target Start/End: Original strand, 2385918 - 2386795
Alignment:
Q  164 aaactataaatagtaatttagtaaatgtaaatttatgtgtatgaaagtgtaacttactctagttccacattttcagacttgtcatttggtagagtaattt 263  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2385918 aaactataaatagtaatttagtaaatgtaaatttatgtgtaagaaagtgtaacttactctagttccacattttcagacttgtcatttggtagagtaattt 2386017  T
Q  264 cacaatggaagcatttcaatgcagattctttaatacttttaaacattttcgtgaaaggcttcttatcttgaagatcatcatcatcttgttctttatacga 363  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  2386018 cacaatggaagcatttcaatgcagattctttaatacttttaaacattttcgtgaaaggctttttatcttgaagatcatcatcatcttgttctttatacga 2386117  T
Q  364 atatatagagcttccactagagaaaatcaagatagaaagaagcatcgaaatcgcaggtatagcaaaccctattacccaaccaaatgtatcttggatgtaa 463  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  2386118 atatatagagcttccactagagaaaatcaagatagaaagaagcatcgaaatcgcaggtatcgcaaaccctattacccaaccaaatgtatcttggatgtaa 2386217  T
Q  464 gacatgactgttacacccattaggcttccagcacaaacaccaaaataccaccattgaaagaaaagtgcttttttgttgctacttgtatcatctgtgttac 563  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2386218 gacatgactgttacacccattaggcttccagcacaaacaccaaaataccaccattgaaagaaaagtgcttttttgttgctacttgtatcatctgtgttac 2386317  T
Q  564 tacaaggtagttcttcatcttcaccaagttgatcagctccaaaggcttgtagagatggattatatccaccttggcctaatgagattaaatagagagataa 663  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2386318 tacaaggtagttcttcatcttcaccaagttgatcagctccaaaggcttgtagagatggattatatccaccttggcctaatgagattaaatagagagataa 2386417  T
Q  664 tgaaagaaatgaagatgacattgatctgtttttgtgatgccatgatcttgctagggctgttgttgtcaatgctgcaagtccctataggaagaaaacacaa 763  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2386418 tgaaagaaatgaagatgacattgatctgtttttgtgatgccatgatcttgctagggctgttgttgtcaatgctgcaagtccctataggaagaaaacacaa 2386517  T
Q  764 gaaaaaatgtcaataactagtgaagaaaaagttgaatattcaaattaacagtaactttctgtttggattgacttatttaagtttatctactgatataagc 863  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |  |||    
T  2386518 gaaaaaatgtcaataactagtgaagaaaaagttgaatattcaaattaacagtaactttctgtttggattgacttatttaagtttatctacaga-aacagc 2386616  T
Q  864 atttgcgagcctttttgagaatatacagaaacagcttaaaaaatatccatgtgtagttttcagcttactttcataagccctcaaggactagcttatgata 963  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||  ||||||||||||||||||||||||||||||||||||||||||||||||    
T  2386617 atttgcgagcctttttgagaatatacagaaacagcttaaaaaatgtccattcgtagttttcagcttactttcataagccctcaaggactagcttatgata 2386716  T
Q  964 acatcttatatgaattgtgtgtttctcaaattagtagcattgtcgttgtgtcagtgtctgtgtcgtggatgatgtccat 1042  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||    
T  2386717 acatcttatatgaattgtgtgtttctcaaattagtagcattgtcgttgtgtcagtgtctgtgtcgtgtctgatgtccat 2386795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 820 - 868
Target Start/End: Complemental strand, 24333092 - 24333044
Alignment:
Q  820 ttctgtttggattgacttatttaagtttatctactgatataagcatttg 868  Q
    |||||||||||||||| ||||| ||||||| |||||| |||||||||||    
T  24333092 ttctgtttggattgacatatttcagtttatgtactgacataagcatttg 24333044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 821 - 862
Target Start/End: Complemental strand, 3525277 - 3525236
Alignment:
Q  821 tctgtttggattgacttatttaagtttatctactgatataag 862  Q
    |||||||||||||||| ||||||||||||||| ||| |||||    
T  3525277 tctgtttggattgactaatttaagtttatctagtgacataag 3525236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 823 - 864
Target Start/End: Complemental strand, 4308928 - 4308887
Alignment:
Q  823 tgtttggattgacttatttaagtttatctactgatataagca 864  Q
    ||||||||||| ||||||| |||||||||||||| |||||||    
T  4308928 tgtttggattggcttatttgagtttatctactgacataagca 4308887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 823 - 860
Target Start/End: Original strand, 31776191 - 31776228
Alignment:
Q  823 tgtttggattgacttatttaagtttatctactgatata 860  Q
    ||||||||||||||||||| || |||||||||||||||    
T  31776191 tgtttggattgacttatttgagcttatctactgatata 31776228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.00000000000003; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 115 - 164
Target Start/End: Complemental strand, 5770925 - 5770876
Alignment:
Q  115 ctttcgtgatgttatcgtgaaatctttgtcgtgatgtatagcaattctca 164  Q
    ||||||||||||||| ||||||||||||||| ||||||||||||||||||    
T  5770925 ctttcgtgatgttatggtgaaatctttgtcgcgatgtatagcaattctca 5770876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 825 - 872
Target Start/End: Complemental strand, 18286940 - 18286893
Alignment:
Q  825 tttggattgacttatttaagtttatctactgatataagcatttgcgag 872  Q
    |||||||||| |||||  |||||||||||| |||||||||||||||||    
T  18286940 tttggattgaattattcgagtttatctactaatataagcatttgcgag 18286893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 822 - 864
Target Start/End: Original strand, 3280654 - 3280696
Alignment:
Q  822 ctgtttggattgacttatttaagtttatctactgatataagca 864  Q
    ||||||||||||||||||||||  |||||||||||| ||||||    
T  3280654 ctgtttggattgacttatttaaacttatctactgatttaagca 3280696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 821 - 862
Target Start/End: Complemental strand, 32197886 - 32197845
Alignment:
Q  821 tctgtttggattgacttatttaagtttatctactgatataag 862  Q
    ||||||||||||||||| ||| |||||||||||||| |||||    
T  32197886 tctgtttggattgacttttttgagtttatctactgacataag 32197845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000004; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 822 - 864
Target Start/End: Complemental strand, 37276896 - 37276854
Alignment:
Q  822 ctgtttggattgacttatttaagtttatctactgatataagca 864  Q
    |||||||||| |||||||||||||||||||||| |||||||||    
T  37276896 ctgtttggatcgacttatttaagtttatctactaatataagca 37276854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 823 - 864
Target Start/End: Original strand, 37419586 - 37419627
Alignment:
Q  823 tgtttggattgacttatttaagtttatctactgatataagca 864  Q
    ||||||||||||||||||| |||||||||||| |||||||||    
T  37419586 tgtttggattgacttatttgagtttatctacttatataagca 37419627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 822 - 864
Target Start/End: Complemental strand, 1830191 - 1830149
Alignment:
Q  822 ctgtttggattgacttatttaagtttatctactgatataagca 864  Q
    |||||||||||||||||||| ||||||| |||||| |||||||    
T  1830191 ctgtttggattgacttatttgagtttatttactgacataagca 1830149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 822 - 868
Target Start/End: Original strand, 15370241 - 15370287
Alignment:
Q  822 ctgtttggattgacttatttaagtttatctactgatataagcatttg 868  Q
    |||||||||||||||||||| || ||||||||||  |||||||||||    
T  15370241 ctgtttggattgacttatttgagcttatctactggcataagcatttg 15370287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 824 - 861
Target Start/End: Original strand, 40059381 - 40059418
Alignment:
Q  824 gtttggattgacttatttaagtttatctactgatataa 861  Q
    |||||||||||||||||| |||||||||||||| ||||    
T  40059381 gtttggattgacttatttgagtttatctactgacataa 40059418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 824 - 861
Target Start/End: Original strand, 40085281 - 40085318
Alignment:
Q  824 gtttggattgacttatttaagtttatctactgatataa 861  Q
    |||||||||||||||||| |||||||||||||| ||||    
T  40085281 gtttggattgacttatttgagtttatctactgacataa 40085318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.000000002; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 821 - 854
Target Start/End: Complemental strand, 28615487 - 28615454
Alignment:
Q  821 tctgtttggattgacttatttaagtttatctact 854  Q
    ||||||||||||||||||||||||||||||||||    
T  28615487 tctgtttggattgacttatttaagtttatctact 28615454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 821 - 864
Target Start/End: Complemental strand, 679444 - 679401
Alignment:
Q  821 tctgtttggattgacttatttaagtttatctactgatataagca 864  Q
    |||||||| |||||||||||| ||||||||||||| ||||||||    
T  679444 tctgtttgaattgacttatttgagtttatctactggtataagca 679401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 821 - 868
Target Start/End: Complemental strand, 41433528 - 41433481
Alignment:
Q  821 tctgtttggattgacttatttaagtttatctactgatataagcatttg 868  Q
    |||||||| |||||||||||| ||||||||| |||| |||||||||||    
T  41433528 tctgtttgaattgacttatttgagtttatctcctgacataagcatttg 41433481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 823 - 866
Target Start/End: Original strand, 53034718 - 53034761
Alignment:
Q  823 tgtttggattgacttatttaagtttatctactgatataagcatt 866  Q
    ||||||| ||||||||||| || |||||||||||||||||||||    
T  53034718 tgtttggtttgacttatttgagcttatctactgatataagcatt 53034761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 822 - 864
Target Start/End: Original strand, 22662169 - 22662211
Alignment:
Q  822 ctgtttggattgacttatttaagtttatctactgatataagca 864  Q
    |||||||||||||||||||| |||||||||||| | |||||||    
T  22662169 ctgtttggattgacttatttgagtttatctactaacataagca 22662211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 822 - 864
Target Start/End: Original strand, 22666648 - 22666690
Alignment:
Q  822 ctgtttggattgacttatttaagtttatctactgatataagca 864  Q
    |||||||||||||||||||| |||||||||||| | |||||||    
T  22666648 ctgtttggattgacttatttgagtttatctactaacataagca 22666690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 821 - 862
Target Start/End: Original strand, 27043747 - 27043788
Alignment:
Q  821 tctgtttggattgacttatttaagtttatctactgatataag 862  Q
    ||||||||||||||||||||| || ||||||||||| |||||    
T  27043747 tctgtttggattgacttatttgagcttatctactgacataag 27043788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 823 - 856
Target Start/End: Complemental strand, 52428815 - 52428782
Alignment:
Q  823 tgtttggattgacttatttaagtttatctactga 856  Q
    ||||||||||||||||||| ||||||||||||||    
T  52428815 tgtttggattgacttatttgagtttatctactga 52428782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.000000002; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 821 - 862
Target Start/End: Original strand, 25447162 - 25447203
Alignment:
Q  821 tctgtttggattgacttatttaagtttatctactgatataag 862  Q
    ||||||||||||||||||||| |||||||||||||| |||||    
T  25447162 tctgtttggattgacttatttgagtttatctactgacataag 25447203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 821 - 862
Target Start/End: Original strand, 36507009 - 36507050
Alignment:
Q  821 tctgtttggattgacttatttaagtttatctactgatataag 862  Q
    ||||||||||||| ||||||| ||||||||||||||||||||    
T  36507009 tctgtttggattggcttatttgagtttatctactgatataag 36507050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 821 - 863
Target Start/End: Original strand, 47903997 - 47904039
Alignment:
Q  821 tctgtttggattgacttatttaagtttatctactgatataagc 863  Q
    ||||||||||||||||||||| ||||||||  |||||||||||    
T  47903997 tctgtttggattgacttatttgagtttatcctctgatataagc 47904039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 825 - 862
Target Start/End: Complemental strand, 26911740 - 26911703
Alignment:
Q  825 tttggattgacttatttaagtttatctactgatataag 862  Q
    ||||||||||||||||| |||||||||||||| |||||    
T  26911740 tttggattgacttatttgagtttatctactgacataag 26911703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 825 - 868
Target Start/End: Original strand, 39551130 - 39551173
Alignment:
Q  825 tttggattgacttatttaagtttatctactgatataagcatttg 868  Q
    ||||||||||||||||| || |||||||| ||||||||||||||    
T  39551130 tttggattgacttatttgagattatctacggatataagcatttg 39551173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 821 - 854
Target Start/End: Complemental strand, 10727497 - 10727464
Alignment:
Q  821 tctgtttggattgacttatttaagtttatctact 854  Q
    ||||||||||||||||||||| ||||||||||||    
T  10727497 tctgtttggattgacttatttgagtttatctact 10727464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.00000002; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 821 - 868
Target Start/End: Original strand, 28691753 - 28691800
Alignment:
Q  821 tctgtttggattgacttatttaagtttatctactgatataagcatttg 868  Q
    ||||||||||||||||||||| ||||||||| || | |||||||||||    
T  28691753 tctgtttggattgacttatttgagtttatctgctaacataagcatttg 28691800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 821 - 868
Target Start/End: Complemental strand, 41040318 - 41040271
Alignment:
Q  821 tctgtttggattgacttatttaagtttatctactgatataagcatttg 868  Q
    |||||||| ||||| |||||| |||||||||||||||||||| |||||    
T  41040318 tctgtttgaattgatttatttgagtttatctactgatataagtatttg 41040271  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 825 - 862
Target Start/End: Complemental strand, 9210970 - 9210933
Alignment:
Q  825 tttggattgacttatttaagtttatctactgatataag 862  Q
    ||||||||||||||||| || |||||||||||||||||    
T  9210970 tttggattgacttatttgagcttatctactgatataag 9210933  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 821 - 862
Target Start/End: Original strand, 37064385 - 37064426
Alignment:
Q  821 tctgtttggattgacttatttaagtttatctactgatataag 862  Q
    ||||||||||||||||||||| |  |||||||||||||||||    
T  37064385 tctgtttggattgacttatttgatcttatctactgatataag 37064426  T

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Target: chr1 (Bit Score: 32; Significance: 0.00000002; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 829 - 868
Target Start/End: Complemental strand, 4200379 - 4200340
Alignment:
Q  829 gattgacttatttaagtttatctactgatataagcatttg 868  Q
    ||||||||||||| ||||||| ||||||||||||||||||    
T  4200379 gattgacttattttagtttatatactgatataagcatttg 4200340  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 822 - 872
Target Start/End: Original strand, 37241739 - 37241788
Alignment:
Q  822 ctgtttggattgacttatttaagtttatctactgatataagcatttgcgag 872  Q
    ||||||||||||||||||||||| ||||||||||  ||||||| |||||||    
T  37241739 ctgtttggattgacttatttaagcttatctactg-cataagcacttgcgag 37241788  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 823 - 864
Target Start/End: Complemental strand, 6292643 - 6292602
Alignment:
Q  823 tgtttggattgacttatttaagtttatctactgatataagca 864  Q
    ||||||||||||||||||| || ||||||||||| |||||||    
T  6292643 tgtttggattgacttatttgagcttatctactgacataagca 6292602  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 821 - 854
Target Start/End: Original strand, 30013996 - 30014029
Alignment:
Q  821 tctgtttggattgacttatttaagtttatctact 854  Q
    ||||||||||||||||||||| ||||||||||||    
T  30013996 tctgtttggattgacttatttgagtttatctact 30014029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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