View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13271_high_5 (Length: 577)
Name: NF13271_high_5
Description: NF13271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13271_high_5 |
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Alignment Details
Target: chr6 (Bit Score: 384; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 164 - 559
Target Start/End: Original strand, 2385918 - 2386313
Alignment:
| Q |
164 |
aaactataaatagtaatttagtaaatgtaaatttatgtgtatgaaagtgtaacttactctagttccacattttcagacttgtcatttggtagagtaattt |
263 |
Q |
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| T |
2385918 |
aaactataaatagtaatttagtaaatgtaaatttatgtgtaagaaagtgtaacttactctagttccacattttcagacttgtcatttggtagagtaattt |
2386017 |
T |
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| Q |
264 |
cacaatggaagcatttcaatgcagattctttaatacttttaaacattttcgtgaaaggcttcttatcttgaagatcatcatcatcttgttctttatacga |
363 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
2386018 |
cacaatggaagcatttcaatgcagattctttaatacttttaaacattttcgtgaaaggctttttatcttgaagatcatcatcatcttgttctttatacga |
2386117 |
T |
|
| Q |
364 |
atatatagagcttccactagagaaaatcaagatagaaagaagcatcgaaatcgcaggtatagcaaaccctattacccaaccaaatgtatcttggatgtaa |
463 |
Q |
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| T |
2386118 |
atatatagagcttccactagagaaaatcaagatagaaagaagcatcgaaatcgcaggtatcgcaaaccctattacccaaccaaatgtatcttggatgtaa |
2386217 |
T |
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| Q |
464 |
gacatgactgttacacccattaggcttccagcacaaacaccaaaataccaccattgaaagaaaagtgcttttttgttgctacttgtatcatctgtg |
559 |
Q |
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| T |
2386218 |
gacatgactgttacacccattaggcttccagcacaaacaccaaaataccaccattgaaagaaaagtgcttttttgttgctacttgtatcatctgtg |
2386313 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 115 - 164
Target Start/End: Complemental strand, 5770925 - 5770876
Alignment:
| Q |
115 |
ctttcgtgatgttatcgtgaaatctttgtcgtgatgtatagcaattctca |
164 |
Q |
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| T |
5770925 |
ctttcgtgatgttatggtgaaatctttgtcgcgatgtatagcaattctca |
5770876 |
T |
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