View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13271_high_9 (Length: 395)
Name: NF13271_high_9
Description: NF13271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13271_high_9 |
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Alignment Details
Target: chr5 (Bit Score: 365; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 9 - 377
Target Start/End: Original strand, 18664623 - 18664991
Alignment:
| Q |
9 |
caagaatatgaaacttttctaacacttgcaaaacatcaattgcttccttcacttcaccctccatgcaagaactatcaagttcctcaatcaatttgcgctc |
108 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18664623 |
caagaatatgaaacttttctaacacttgcaaaacatcaattgcttccttcacttcaccctccatgcaagaactatcaagttcctcaatcaatttgcgctc |
18664722 |
T |
|
| Q |
109 |
agtcatgttcatgttcctgaacacgttgactgcatcatctacagaaccacattgaaaatacatctctaatattctaatgcatgtgcgaactgtgagaggt |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18664723 |
agtcatgttcatgttcctgaacacgttgactgcatcatctacagaaccacattgaaaatacatctctaatattctaatgcatgtgcgaactgtgagaggt |
18664822 |
T |
|
| Q |
209 |
gacagatgttgtaaaacatatatgtgtacaacttttgcctcttcaagaaactcagcctttccacacagttgcattaatcgcaaacaaagatacaaatcca |
308 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18664823 |
gacaaatgttgtaaaacatatatgtgtacaacttttgcctcttcaagaaactcagcctttccacacagttgcattaatcgcaaacaaagatacaaatcca |
18664922 |
T |
|
| Q |
309 |
cataagtatgaagcttttctaactcttgcaaaacagcaattgctttcttcacttcaccctccttgcaaa |
377 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18664923 |
cataagtatgaagcttttctaactcttgcaaaacagcaattgctttcttcacttcaccctccttgcaaa |
18664991 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 117 - 376
Target Start/End: Original strand, 18664431 - 18664690
Alignment:
| Q |
117 |
tcatgttcctgaacacgttgactgcatcatctacagaaccacattgaaaatacatctctaatattctaatgcatgtgcgaactgtgagaggtgacagatg |
216 |
Q |
| |
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|||||||| |||| |||||||||||||||||||||||||||||||||||||||||||| ||||||| | ||||||||| ||| | |||||||||| ||| |
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|
| T |
18664431 |
tcatgttcttgaatacgttgactgcatcatctacagaaccacattgaaaatacatctccaatattccattgcatgtgctgactttaagaggtgacaaatg |
18664530 |
T |
|
| Q |
217 |
ttgtaaaacatatatgtgtacaacttttgcctcttcaagaaactcagcctttccacacagttgcattaatcgcaaacaaagatacaaatccacataagta |
316 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||| ||| | ||| ||||| |||||||||||||||||||| ||| |||||| ||| | || |
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|
| T |
18664531 |
ttgtaaaacatatctgtgtacaacttttgcctcttcaagagacttggtcttcccacattgttgcattaatcgcaaacaacgatccaaatctacaagaata |
18664630 |
T |
|
| Q |
317 |
tgaagcttttctaactcttgcaaaacagcaattgctttcttcacttcaccctccttgcaa |
376 |
Q |
| |
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|||| |||||||||| ||||||||||| ||||||||| |||||||||||||||| ||||| |
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|
| T |
18664631 |
tgaaacttttctaacacttgcaaaacatcaattgcttccttcacttcaccctccatgcaa |
18664690 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 354; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 12 - 377
Target Start/End: Complemental strand, 15079202 - 15078837
Alignment:
| Q |
12 |
gaatatgaaacttttctaacacttgcaaaacatcaattgcttccttcacttcaccctccatgcaagaactatcaagttcctcaatcaatttgcgctcagt |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
15079202 |
gaatatgaaacttttctaacacttgcaaaacatcaattgcttccttcacttcaccctccatgcaagaactatcaagttcctcaatcaatttgcgctcagt |
15079103 |
T |
|
| Q |
112 |
catgttcatgttcctgaacacgttgactgcatcatctacagaaccacattgaaaatacatctctaatattctaatgcatgtgcgaactgtgagaggtgac |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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|
| T |
15079102 |
catgttcatgttcctgaacacgttgactgcatcatctacagaaccacattgaaaatacatctctaatattctaatgcatgtgcggactgtgagaggtgac |
15079003 |
T |
|
| Q |
212 |
agatgttgtaaaacatatatgtgtacaacttttgcctcttcaagaaactcagcctttccacacagttgcattaatcgcaaacaaagatacaaatccacat |
311 |
Q |
| |
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| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15079002 |
aaatgttgtaaaacatatctgtgtacaacttttgcctcttcaagaaactcagcctttccacacagttgcattaatcgcaaacaaagatacaaatccacat |
15078903 |
T |
|
| Q |
312 |
aagtatgaagcttttctaactcttgcaaaacagcaattgctttcttcacttcaccctccttgcaaa |
377 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
15078902 |
aagtatgaagcttttctaactcttgcaaaacagcaattgctttcttcacttcaccctccttgcaaa |
15078837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 116 - 376
Target Start/End: Complemental strand, 15079398 - 15079138
Alignment:
| Q |
116 |
ttcatgttcctgaacacgttgactgcatcatctacagaaccacattgaaaatacatctctaatattctaatgcatgtgcgaactgtgagaggtgacagat |
215 |
Q |
| |
|
||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||| ||||||| | ||||||||| ||| | |||||||||| || |
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|
| T |
15079398 |
ttcatgttcttgaatacgttgactgcatcatctacagaaccacattgaaaatacatctccaatattccattgcatgtgctgactttaagaggtgacaaat |
15079299 |
T |
|
| Q |
216 |
gttgtaaaacatatatgtgtacaacttttgcctcttcaagaaactcagcctttccacacagttgcattaatcgcaaacaaagatacaaatccacataagt |
315 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||| ||| | ||| ||||| |||||||||||| ||||||| ||| |||||| |||| | | |
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|
| T |
15079298 |
gttgtaaaacatatctgtgtacaacttttgcctcttcaagagacttggtcttcccacattgttgcattaatctcaaacaacgatccaaatctacatgaat |
15079199 |
T |
|
| Q |
316 |
atgaagcttttctaactcttgcaaaacagcaattgctttcttcacttcaccctccttgcaa |
376 |
Q |
| |
|
||||| |||||||||| ||||||||||| ||||||||| |||||||||||||||| ||||| |
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|
| T |
15079198 |
atgaaacttttctaacacttgcaaaacatcaattgcttccttcacttcaccctccatgcaa |
15079138 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 69; Significance: 7e-31; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 126 - 378
Target Start/End: Original strand, 7449451 - 7449703
Alignment:
| Q |
126 |
tgaacacgttgactgcatcatctacagaaccacattgaaaatacatctctaatattctaatgcatgtgcgaactgtgagaggtgacagatgttgtaaaac |
225 |
Q |
| |
|
||||||||| || ||||||||||| ||||||||||| |||||||||||| |||| |||| || ||||| ||| || ||||| || |||||| ||| | |
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|
| T |
7449451 |
tgaacacgtcgattgcatcatctagagaaccacattcaaaatacatctccaatactctattgtctgtgctaaccgtaagaggatgcaaatgttgcaaagc |
7449550 |
T |
|
| Q |
226 |
atatatgtgtacaacttttgcctcttcaagaaactcagcctttccacacagttgcattaatcgcaaacaaagatacaaatccacataagtatgaagcttt |
325 |
Q |
| |
|
|| | ||||||||||| ||||||| |||||| ||| |||||| ||||| | |||||||| |||||||| | | ||||||||||| | ||||||||||| |
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|
| T |
7449551 |
atgtctgtgtacaactcttgcctcctcaagagacttagccttcccacaaatgcgcattaattgcaaacaacgctgcaaatccacatgaatatgaagcttt |
7449650 |
T |
|
| Q |
326 |
tctaactcttgcaaaacagcaattgctttcttcacttcaccctccttgcaaaa |
378 |
Q |
| |
|
|| |||| ||||||| ||| ||||| |||||||| ||| ||| ||||||| |
|
|
| T |
7449651 |
tccaacttttgcaaattttcaactgcttccttcactttaccatccctgcaaaa |
7449703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 126 - 341
Target Start/End: Original strand, 7534989 - 7535204
Alignment:
| Q |
126 |
tgaacacgttgactgcatcatctacagaaccacattgaaaatacatctctaatattctaatgcatgtgcgaactgtgagaggtgacagatgttgtaaaac |
225 |
Q |
| |
|
||||||||| || ||||||||||| ||||||||||| |||||||||||| |||| |||| || ||||| ||| || ||||| || |||||| ||| | |
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|
| T |
7534989 |
tgaacacgtcgattgcatcatctagagaaccacattcaaaatacatctccaatactctattgtctgtgctaaccgtaagaggatgcaaatgttgcaaagc |
7535088 |
T |
|
| Q |
226 |
atatatgtgtacaacttttgcctcttcaagaaactcagcctttccacacagttgcattaatcgcaaacaaagatacaaatccacataagtatgaagcttt |
325 |
Q |
| |
|
|| | ||||||||||| |||||||||||||| ||| || ||| ||||| | ||||||||| |||||||| | | |||||||| || | ||| ||||||| |
|
|
| T |
7535089 |
atgtctgtgtacaactcttgcctcttcaagagacttagtcttcccacaaacgtgcattaattgcaaacaacgctgcaaatccatatgaatataaagcttt |
7535188 |
T |
|
| Q |
326 |
tctaactcttgcaaaa |
341 |
Q |
| |
|
|| ||| ||||||||| |
|
|
| T |
7535189 |
tccaacacttgcaaaa |
7535204 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 12 - 95
Target Start/End: Original strand, 7449637 - 7449720
Alignment:
| Q |
12 |
gaatatgaaacttttctaacacttgcaaaacatcaattgcttccttcacttcaccctccatgcaagaactatcaagttcctcaa |
95 |
Q |
| |
|
||||||||| |||||| ||| ||||||| |||| |||||||||||||| ||| ||| ||||| ||||||| |||||||||| |
|
|
| T |
7449637 |
gaatatgaagcttttccaacttttgcaaattttcaactgcttccttcactttaccatccctgcaaaaactatctagttcctcaa |
7449720 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 127 - 256
Target Start/End: Complemental strand, 27578260 - 27578131
Alignment:
| Q |
127 |
gaacacgttgactgcatcatctacagaaccacattgaaaatacatctctaatattctaatgcatgtgcgaactgtgagaggtgacagatgttgtaaaaca |
226 |
Q |
| |
|
|||||| || ||| ||||| ||||||||||||| | |||||||||||| | ||| || ||||||| | | | |||||||| ||| ||||| ||| || |
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|
| T |
27578260 |
gaacaccttaactacatcaactacagaaccacaattaaaatacatctcccaaattatattgcatgttctgaatttgagaggtaacacatgtttcaaagca |
27578161 |
T |
|
| Q |
227 |
tatatgtgtacaacttttgcctcttcaaga |
256 |
Q |
| |
|
||| | ||||| |||||| ||||||||||| |
|
|
| T |
27578160 |
tatctatgtacgactttttcctcttcaaga |
27578131 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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