View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13271_low_12 (Length: 334)
Name: NF13271_low_12
Description: NF13271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13271_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 1 - 317
Target Start/End: Complemental strand, 4776283 - 4775967
Alignment:
| Q |
1 |
ggccacctcattctgctcacaacctaaacctgactccacatactgtgatagtaaggaatttcgcagtatacttggtgccttacattacctttcaatcaca |
100 |
Q |
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| T |
4776283 |
ggccacctcattctgctcacaacctaaacccgactccacatactgtgacagtaaggaatttcgcagtatgcttggtgccttacactacctttcaatcact |
4776184 |
T |
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| Q |
101 |
cgcccggacatagcattcccggtgaataaactagcacaacaaatgcaagctcctactgtgacagatatgcaagccttaaatagagtattgcgctatctca |
200 |
Q |
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| T |
4776183 |
cgcccagacattgcatttccagtgaataaactagcataacaaatgcaagctcctactgtgacagatatgcaagccttgaagagagtattgcgctatctca |
4776084 |
T |
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| Q |
201 |
aatccaccatctccaatggactccatctcacgagatcttcaaatacaagcctcacaagcttttgtgatgcagattgggctggagacacaattgatcggaa |
300 |
Q |
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| T |
4776083 |
aatccaccatctccaatggactccatctcacaagatcttcaaatacaaacctcacaagcttttgtgatgcagattaggcaggagacacaattgacaggaa |
4775984 |
T |
|
| Q |
301 |
atcgacaggtgcttatt |
317 |
Q |
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||| ||||||||||||| |
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| T |
4775983 |
atcaacaggtgcttatt |
4775967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 245 - 317
Target Start/End: Complemental strand, 43061400 - 43061328
Alignment:
| Q |
245 |
acaagcctcacaagcttttgtgatgcagattgggctggagacacaattgatcggaaatcgacaggtgcttatt |
317 |
Q |
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||||||||||||| ||||||||||||||||||||| |||||||||||||| ||| || ||||||||||||| |
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| T |
43061400 |
acaagcctcacaaacttttgtgatgcagattgggcaggagacacaattgacaggatatgaacaggtgcttatt |
43061328 |
T |
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