View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13271_low_15 (Length: 279)

Name: NF13271_low_15
Description: NF13271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13271_low_15
NF13271_low_15
[»] chr3 (15 HSPs)
chr3 (49-265)||(9112047-9112263)
chr3 (67-200)||(8746959-8747092)
chr3 (73-197)||(8755589-8755713)
chr3 (67-200)||(9101233-9101366)
chr3 (73-200)||(9015428-9015555)
chr3 (79-197)||(9108802-9108920)
chr3 (67-200)||(9023455-9023588)
chr3 (67-200)||(9029118-9029251)
chr3 (67-200)||(9034625-9034758)
chr3 (73-265)||(9019231-9019420)
chr3 (63-200)||(8962566-8962703)
chr3 (60-200)||(8965281-8965421)
chr3 (84-200)||(8957126-8957242)
chr3 (158-265)||(8988291-8988392)
chr3 (104-200)||(9026159-9026255)


Alignment Details
Target: chr3 (Bit Score: 189; Significance: 1e-102; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 49 - 265
Target Start/End: Complemental strand, 9112263 - 9112047
Alignment:
Q  49 gaaccgtcttgttctcaatgcttaaagatagcaagcattgacaacacaatcaaagctcccatcatagccactgaatttgtaagagatccaacagctccgg 148  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  9112263 gaaccgtcttgttctcaatgcttaaagatagcaagcattgacaacacaatcaaagctcccatcatagccactggatttgtaagagatccaacagctccgg 9112164  T
Q  149 tatcaggtgctggtgccggagccaacgagggactgaggtcttgagccgaggctacattgacggctaagacgacaacaaaaaagaagaaaagaatcttcat 248  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||| |||| |||| ||||||||    
T  9112163 tatcaggtgctggtgccggagccaacgagggactgaggtcttgggccgagactacattgacggctaagacgacaacaaaaaggaaggaaaggatcttcat 9112064  T
Q  249 tgtggtagctgatgatg 265  Q
    ||||||||| |||||||    
T  9112063 tgtggtagccgatgatg 9112047  T

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Target: chr3; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 67 - 200
Target Start/End: Complemental strand, 8747092 - 8746959
Alignment:
Q  67 tgcttaaagatagcaagcattgacaacacaatcaaagctcccatcatagccactgaatttgtaagagatccaacagctccggtatcaggtgctggtgccg 166  Q
    ||||| ||||| || |||||||||||||||||  || |||| |||||||||||||||||||||| |||||||||||||||   ||||||  ||||||| |    
T  8747092 tgcttgaagatggcgagcattgacaacacaattgaaactccaatcatagccactgaatttgtaacagatccaacagctccaacatcaggacctggtgctg 8746993  T
Q  167 gagccaacgagggactgaggtcttgagccgaggc 200  Q
    ||||||||||||||||||||||||| || |||||    
T  8746992 gagccaacgagggactgaggtcttgggcagaggc 8746959  T

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Target: chr3; HSP #3
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 73 - 197
Target Start/End: Complemental strand, 8755713 - 8755589
Alignment:
Q  73 aagatagcaagcattgacaacacaatcaaagctcccatcatagccactgaatttgtaagagatccaacagctccggtatcaggtgctggtgccggagcca 172  Q
    ||||| || ||||| ||||| | |||| ||||||| |||||||| ||||||||||||| ||||||| |||| |||| ||||||  |||||||||||||||    
T  8755713 aagatggcgagcatagacaaaataatcgaagctccaatcatagcaactgaatttgtaacagatccagcagcaccggcatcaggatctggtgccggagcca 8755614  T
Q  173 acgagggactgaggtcttgagccga 197  Q
    |||||||||||||||||||||||||    
T  8755613 acgagggactgaggtcttgagccga 8755589  T

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Target: chr3; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 67 - 200
Target Start/End: Complemental strand, 9101366 - 9101233
Alignment:
Q  67 tgcttaaagatagcaagcattgacaacacaatcaaagctcccatcatagccactgaatttgtaagagatccaacagctccggtatcaggtgctggtgccg 166  Q
    ||||||||||| || ||||||||||| |||||  || |||| ||||||||||||||| |||||| ||| ||| ||||||| | ||||||  ||||||| |    
T  9101366 tgcttaaagatggcgagcattgacaatacaattgaaactccgatcatagccactgaacttgtaacagaaccagcagctccagcatcagggcctggtgctg 9101267  T
Q  167 gagccaacgagggactgaggtcttgagccgaggc 200  Q
    ||||||||||||||||||||| ||| || |||||    
T  9101266 gagccaacgagggactgaggttttgggcagaggc 9101233  T

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Target: chr3; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 73 - 200
Target Start/End: Complemental strand, 9015555 - 9015428
Alignment:
Q  73 aagatagcaagcattgacaacacaatcaaagctcccatcatagccactgaatttgtaagagatccaacagctccggtatcaggtgctggtgccggagcca 172  Q
    ||||| || ||||||||||| |||||  || |||| | ||||| |||||||||||||| | ||||| | ||||||| ||||||  |||||||||||| ||    
T  9015555 aagatggcgagcattgacaatacaattgaaactccaaccatagtcactgaatttgtaacatatccagctgctccggcatcaggacctggtgccggagaca 9015456  T
Q  173 acgagggactgaggtcttgagccgaggc 200  Q
    ||||||| ||||||||||||||||||||    
T  9015455 acgaggggctgaggtcttgagccgaggc 9015428  T

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Target: chr3; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 79 - 197
Target Start/End: Complemental strand, 9108920 - 9108802
Alignment:
Q  79 gcaagcattgacaacacaatcaaagctcccatcatagccactgaatttgtaagagatccaacagctccggtatcaggtgctggtgccggagccaacgagg 178  Q
    |||||||||||||| |||||  ||||||| ||||| ||||||||| |||||| ||||||  ||||||||  ||||||  ||| ||| |||||||| ||||    
T  9108920 gcaagcattgacaagacaattgaagctccgatcatggccactgaacttgtaacagatccggcagctccgacatcaggacctgatgctggagccaatgagg 9108821  T
Q  179 gactgaggtcttgagccga 197  Q
    |||||||||||||||||||    
T  9108820 gactgaggtcttgagccga 9108802  T

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Target: chr3; HSP #7
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 67 - 200
Target Start/End: Complemental strand, 9023588 - 9023455
Alignment:
Q  67 tgcttaaagatagcaagcattgacaacacaatcaaagctcccatcatagccactgaatttgtaagagatccaacagctccggtatcaggtgctggtgccg 166  Q
    ||||| ||||| || ||||||||||| |||| | ||  ||| | ||||||||||||| |||||| ||||||| ||||||| | ||||||  |||||||||    
T  9023588 tgcttgaagatggcgagcattgacaatacaaccgaaattccgaccatagccactgaacttgtaacagatccagcagctccagcatcaggacctggtgccg 9023489  T
Q  167 gagccaacgagggactgaggtcttgagccgaggc 200  Q
    |||||||||||||||| |||||||| || |||||    
T  9023488 gagccaacgagggactaaggtcttgggcagaggc 9023455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 67 - 200
Target Start/End: Complemental strand, 9029251 - 9029118
Alignment:
Q  67 tgcttaaagatagcaagcattgacaacacaatcaaagctcccatcatagccactgaatttgtaagagatccaacagctccggtatcaggtgctggtgccg 166  Q
    ||||| ||||| || |||||||||||||||||  || |||| ||||||||| ||||| |||||| ||||||| ||||||| | ||||||  ||||||| |    
T  9029251 tgcttgaagatggcgagcattgacaacacaattgaaactccgatcatagccgctgaacttgtaatagatccagcagctccagcatcaggacctggtgctg 9029152  T
Q  167 gagccaacgagggactgaggtcttgagccgaggc 200  Q
    |||||||||| ||||| |||||||| || |||||    
T  9029151 gagccaacgaaggactaaggtcttgggcagaggc 9029118  T

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Target: chr3; HSP #9
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 67 - 200
Target Start/End: Complemental strand, 9034758 - 9034625
Alignment:
Q  67 tgcttaaagatagcaagcattgacaacacaatcaaagctcccatcatagccactgaatttgtaagagatccaacagctccggtatcaggtgctggtgccg 166  Q
    ||||| ||||| || |||||||||||||||||  || |||| ||||||||||| ||| ||| || ||||||| ||||||| | ||||||  |||||||||    
T  9034758 tgcttgaagatggcgagcattgacaacacaattgaaactccgatcatagccaccgaacttgcaacagatccagcagctccagcatcaggacctggtgccg 9034659  T
Q  167 gagccaacgagggactgaggtcttgagccgaggc 200  Q
    |||||||||| ||||| |||||||| || |||||    
T  9034658 gagccaacgaaggactaaggtcttgggcagaggc 9034625  T

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Target: chr3; HSP #10
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 73 - 265
Target Start/End: Complemental strand, 9019420 - 9019231
Alignment:
Q  73 aagatagcaagcattgacaacacaatcaaagctcccatcatagccactgaatttgtaagagatccaacagctccggtatcaggtgctggtgccggagcca 172  Q
    ||||| ||||||||||||||||||||  ||||||| |||||||| |||||| | |||| |||||||  ||| ||   ||||||  |||||||||||||      
T  9019420 aagatggcaagcattgacaacacaattgaagctccgatcatagcaactgaactcgtaacagatccacaagccccaacatcaggacctggtgccggagcgg 9019321  T
Q  173 acgagggactgaggtcttgagccgaggctacattgacggctaagacgacaacaaaaaag-aagaaaagaatcttcattgtggtagctgatgatg 265  Q
    | |||||||| ||||||||||||||||| |||   || || |  | ||||||||||||| |||| ||||| ||||||||| |||||||||||||    
T  9019320 atgagggactaaggtcttgagccgaggccaca---acagccacaaagacaacaaaaaagaaagagaagaa-cttcattgtagtagctgatgatg 9019231  T

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Target: chr3; HSP #11
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 63 - 200
Target Start/End: Complemental strand, 8962703 - 8962566
Alignment:
Q  63 tcaatgcttaaagatagcaagcattgacaacacaatcaaagctcccatcatagccactgaatttgtaagagatccaacagctccggtatcaggtgctggt 162  Q
    ||||| ||| |||||||| |||||||| | ||||||  ||||||| ||||||||||| |||  || || ||||||  || |||| | ||||||  |||||    
T  8962703 tcaattcttgaagatagcgagcattgaaagcacaattgaagctccgatcatagccacagaacctgcaacagatccggcaactccagcatcaggacctggt 8962604  T
Q  163 gccggagccaacgagggactgaggtcttgagccgaggc 200  Q
    || ||||| ||||||||||| |||||||| ||||||||    
T  8962603 gctggagctaacgagggactaaggtcttgggccgaggc 8962566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 60 - 200
Target Start/End: Complemental strand, 8965421 - 8965281
Alignment:
Q  60 ttctcaatgcttaaagatagcaagcattgacaacacaatcaaagctcccatcatagccactgaatttgtaagagatccaacagctccggtatcaggtgct 159  Q
    |||||| | ||| ||||| || |||||||||| ||||||  ||||||| ||||| ||||  ||| |||||| ||||||  ||||||| |  |||||   |    
T  8965421 ttctcagttcttgaagattgcgagcattgacagcacaattgaagctccgatcattgccatagaacttgtaacagatccggcagctccagcgtcaggactt 8965322  T
Q  160 ggtgccggagccaacgagggactgaggtcttgagccgaggc 200  Q
    ||||| ||||||||||| ||||| |||||||| ||||||||    
T  8965321 ggtgctggagccaacgacggactaaggtcttgggccgaggc 8965281  T

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Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 84 - 200
Target Start/End: Complemental strand, 8957242 - 8957126
Alignment:
Q  84 cattgacaacacaatcaaagctcccatcatagccactgaatttgtaagagatccaacagctccggtatcaggtgctggtgccggagccaacgagggactg 183  Q
    |||||||| ||||||  ||||||| ||||||||||| ||| |||||| | ||||  ||||||| |  |||||  | ||||| ||||| ||||| |||||     
T  8957242 cattgacagcacaattgaagctccgatcatagccacagaacttgtaacaaatccggcagctccagcgtcaggaccgggtgctggagctaacgacggacta 8957143  T
Q  184 aggtcttgagccgaggc 200  Q
    |||||||| ||||||||    
T  8957142 aggtcttgggccgaggc 8957126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 158 - 265
Target Start/End: Complemental strand, 8988392 - 8988291
Alignment:
Q  158 ctggtgccggagccaacgagggactgaggtcttgagccgaggctacattgacggctaagacgacaacaaaaaagaagaaaagaatcttcattgtggtagc 257  Q
    ||||||| |||| |||||||||||| |||||||| |||||||||||   | |||| || ||||  ||||||| ||||  ||||| ||| |||||||||||    
T  8988392 ctggtgctggagacaacgagggactaaggtcttgggccgaggctac---ggcggcgaatacgatgacaaaaatgaag--aagaa-cttgattgtggtagc 8988299  T
Q  258 tgatgatg 265  Q
    ||||||||    
T  8988298 tgatgatg 8988291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 104 - 200
Target Start/End: Complemental strand, 9026255 - 9026159
Alignment:
Q  104 ctcccatcatagccactgaatttgtaagagatccaacagctccggtatcaggtgctggtgccggagccaacgagggactgaggtcttgagccgaggc 200  Q
    |||| ||||| ||||||||| |||||| ||||||| || |||| | |||||   ||||||| ||||||||||| ||||| || ||||| || |||||    
T  9026255 ctccgatcattgccactgaacttgtaacagatccagcaactccagcatcagaacctggtgctggagccaacgaaggactaagatcttgggcagaggc 9026159  T

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