View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13271_low_18 (Length: 238)

Name: NF13271_low_18
Description: NF13271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13271_low_18
NF13271_low_18
[»] chr5 (2 HSPs)
chr5 (1-221)||(7925985-7926205)
chr5 (153-185)||(35957731-35957763)
[»] chr6 (5 HSPs)
chr6 (132-185)||(2493988-2494041)
chr6 (140-187)||(32888932-32888979)
chr6 (133-207)||(10874235-10874309)
chr6 (152-209)||(25208701-25208758)
chr6 (133-207)||(1485101-1485175)
[»] chr4 (2 HSPs)
chr4 (132-185)||(27096575-27096628)
chr4 (138-205)||(17898085-17898152)
[»] chr7 (1 HSPs)
chr7 (153-204)||(26975314-26975365)
[»] chr2 (1 HSPs)
chr2 (133-204)||(44439310-44439381)
[»] chr1 (4 HSPs)
chr1 (153-207)||(5268295-5268349)
chr1 (140-181)||(39673970-39674011)
chr1 (135-207)||(28464950-28465022)
chr1 (152-180)||(32433735-32433763)
[»] chr8 (3 HSPs)
chr8 (144-213)||(5656374-5656443)
chr8 (152-180)||(961450-961478)
chr8 (135-207)||(16972019-16972091)


Alignment Details
Target: chr5 (Bit Score: 213; Significance: 1e-117; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 7925985 - 7926205
Alignment:
Q  1 tcttcacacttctccaactgacctctccttgttgttgcttccagatacaatacaatggtagtcctaactcacaggccttagtttcttctctctttttccg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  7925985 tcttcacacttctccaactgacctctccttgttgttgcttccagatacaatacaatggtagtcttaactcacaggccttagtttcttctctctttttccg 7926084  T
Q  101 tttgattttatattcttcttgatcaaataaatctcaaaattattgttcgacccacttttacataaatatattcaaacatagatcattcaacattcaactc 200  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7926085 tttgattttatattcttcttgatcaaataaatctcgaaattattgttcgacccacttttacataaatatattcaaacatagatcattcaacattcaactc 7926184  T
Q  201 acttttaatcagagccaattg 221  Q
    |||||||||||||||||||||    
T  7926185 acttttaatcagagccaattg 7926205  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 153 - 185
Target Start/End: Complemental strand, 35957763 - 35957731
Alignment:
Q  153 cacttttacataaatatattcaaacatagatca 185  Q
    |||||||||||||||||||||||||||| ||||    
T  35957763 cacttttacataaatatattcaaacataaatca 35957731  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000001; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 132 - 185
Target Start/End: Complemental strand, 2494041 - 2493988
Alignment:
Q  132 tctcaaaattattgttcgacccacttttacataaatatattcaaacatagatca 185  Q
    ||||||| ||||||||| || |||||||||||||||||||||||||||| ||||    
T  2494041 tctcaaatttattgttcaacacacttttacataaatatattcaaacataaatca 2493988  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 140 - 187
Target Start/End: Complemental strand, 32888979 - 32888932
Alignment:
Q  140 ttattgttcgacccacttttacataaatatattcaaacatagatcatt 187  Q
    ||||||||| || |||||||||||||||||||||||||||| ||||||    
T  32888979 ttattgttcaactcacttttacataaatatattcaaacataaatcatt 32888932  T

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Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 133 - 207
Target Start/End: Complemental strand, 10874309 - 10874235
Alignment:
Q  133 ctcaaaattattgttcgacccacttttacataaatatattcaaacatagatcattcaacattcaactcactttta 207  Q
    |||||||||||| |||||| ||||||||| ||||||||| |||||||| | || |  ||||||||||||| ||||    
T  10874309 ctcaaaattattattcgactcacttttacctaaatatatccaaacataaaccacttcacattcaactcacattta 10874235  T

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Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 152 - 209
Target Start/End: Original strand, 25208701 - 25208758
Alignment:
Q  152 ccacttttacataaatatattcaaacatagatcattcaacattcaactcacttttaat 209  Q
    |||||||||||||||| |||  ||||||| ||||||  ||||||||||||||||||||    
T  25208701 ccacttttacataaatctatcgaaacataaatcattttacattcaactcacttttaat 25208758  T

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Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 133 - 207
Target Start/End: Complemental strand, 1485175 - 1485101
Alignment:
Q  133 ctcaaaattattgttcgacccacttttacataaatatattcaaacatagatcattcaacattcaactcactttta 207  Q
    |||||| ||||||||| || ||||||||||||| | ||| ||||| || |||| ||||| || ||||||||||||    
T  1485175 ctcaaatttattgttcaactcacttttacataagtgtatccaaacgtaaatcactcaactttaaactcactttta 1485101  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 132 - 185
Target Start/End: Complemental strand, 27096628 - 27096575
Alignment:
Q  132 tctcaaaattattgttcgacccacttttacataaatatattcaaacatagatca 185  Q
    ||||||| ||||||||| || |||||||||||||||||||||||||||| ||||    
T  27096628 tctcaaatttattgttcaacacacttttacataaatatattcaaacataaatca 27096575  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 138 - 205
Target Start/End: Complemental strand, 17898152 - 17898085
Alignment:
Q  138 aattattgttcgacccacttttacataaatatattcaaacatagatcattcaacattcaactcacttt 205  Q
    ||||||||||| |  ||||||||| ||||||||| |||||||| |||| |  ||||||||||||||||    
T  17898152 aattattgttcaattcacttttacctaaatatatccaaacataaatcactttacattcaactcacttt 17898085  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 153 - 204
Target Start/End: Complemental strand, 26975365 - 26975314
Alignment:
Q  153 cacttttacataaatatattcaaacatagatcattcaacattcaactcactt 204  Q
    ||||||||||||||  |||||||||||| ||||||  |||||||||||||||    
T  26975365 cacttttacataaacgtattcaaacataaatcattttacattcaactcactt 26975314  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 133 - 204
Target Start/End: Original strand, 44439310 - 44439381
Alignment:
Q  133 ctcaaaattattgttcgacccacttttacataaatatattcaaacatagatcattcaacattcaactcactt 204  Q
    |||||| ||||||||| || |||||||||||||| |||| |||||||| |||| |  ||||| |||||||||    
T  44439310 ctcaaatttattgttcaactcacttttacataaacatatccaaacataaatcactttacatttaactcactt 44439381  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 153 - 207
Target Start/End: Original strand, 5268295 - 5268349
Alignment:
Q  153 cacttttacataaatatattcaaacatagatcattcaacattcaactcactttta 207  Q
    ||||||||||| |||||||||||||| | |||| |  ||||||||||||||||||    
T  5268295 cacttttacatgaatatattcaaacaaaaatcactttacattcaactcactttta 5268349  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 140 - 181
Target Start/End: Original strand, 39673970 - 39674011
Alignment:
Q  140 ttattgttcgacccacttttacataaatatattcaaacatag 181  Q
    ||||||||| || ||||||||||||| |||||||||||||||    
T  39673970 ttattgttcaactcacttttacataagtatattcaaacatag 39674011  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 207
Target Start/End: Complemental strand, 28465022 - 28464950
Alignment:
Q  135 caaaattattgttcgacccacttttacataaatatattcaaacatagatcattcaacattcaactcactttta 207  Q
    |||| ||||||||| ||||| |||||||||||| ||  |||||||| |||||   ||||||||||| ||||||    
T  28465022 caaatttattgttcaacccatttttacataaatgtacacaaacataaatcatgttacattcaactcgctttta 28464950  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 180
Target Start/End: Complemental strand, 32433763 - 32433735
Alignment:
Q  152 ccacttttacataaatatattcaaacata 180  Q
    |||||||||||||||||||||||||||||    
T  32433763 ccacttttacataaatatattcaaacata 32433735  T

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Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 144 - 213
Target Start/End: Original strand, 5656374 - 5656443
Alignment:
Q  144 tgttcgacccacttttacataaatatattcaaacatagatcattcaacattcaactcacttttaatcaga 213  Q
    ||||||||||| ||| ||||||||||||||||||||| || | |  | |||||| |||||||| ||||||    
T  5656374 tgttcgacccattttaacataaatatattcaaacataaataaatttatattcaattcacttttgatcaga 5656443  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 180
Target Start/End: Complemental strand, 961478 - 961450
Alignment:
Q  152 ccacttttacataaatatattcaaacata 180  Q
    |||||||||||||||||||||||||||||    
T  961478 ccacttttacataaatatattcaaacata 961450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 207
Target Start/End: Complemental strand, 16972091 - 16972019
Alignment:
Q  135 caaaattattgttcgacccacttttacataaatatattcaaacatagatcattcaacattcaactcactttta 207  Q
    |||| ||||||||| |  ||||||||||| ||| |||||||||| | ||||||  || |||||||||||||||    
T  16972091 caaatttattgttcaaatcacttttacatgaatgtattcaaacacaaatcattttaccttcaactcactttta 16972019  T

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