View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13271_low_21 (Length: 206)
Name: NF13271_low_21
Description: NF13271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13271_low_21 |
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Alignment Details
Target: chr6 (Bit Score: 77; Significance: 6e-36; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 107 - 187
Target Start/End: Original strand, 8132651 - 8132731
Alignment:
| Q |
107 |
atgttattgtatatcatgtgatgagaaaataactgcaacaatatgatggattcgttccatgattcctagtatttaagtctc |
187 |
Q |
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| T |
8132651 |
atgttattgtatatcatgtgatgagaaaataactgcaacaatacgatggattcgttccatgattcctagtatttaagtctc |
8132731 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 119 - 189
Target Start/End: Original strand, 2806452 - 2806521
Alignment:
| Q |
119 |
atcatgtgatgagaaaataactgcaacaatatgatggattcgttccatgattcctagtatttaagtctctg |
189 |
Q |
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| T |
2806452 |
atcatgtgatgagaaaa-aactgcaacaatatgatggattcgttccatgattcttagtatttaagtctctg |
2806521 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 119 - 182
Target Start/End: Original strand, 2811932 - 2811995
Alignment:
| Q |
119 |
atcatgtgatgagaaaataactgcaacaatatgatggattcgttccatgattcctagtatttaa |
182 |
Q |
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| T |
2811932 |
atcatttgatgagaaaaaaactgcaacaatatgatggatttgttccatgattcctagtatttaa |
2811995 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 141 - 181
Target Start/End: Complemental strand, 40251927 - 40251887
Alignment:
| Q |
141 |
gcaacaatatgatggattcgttccatgattcctagtattta |
181 |
Q |
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| T |
40251927 |
gcaacaatatgatgaattcgttccctgattcctagtattta |
40251887 |
T |
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