View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13271_low_4 (Length: 709)
Name: NF13271_low_4
Description: NF13271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13271_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 367; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 1 - 449
Target Start/End: Complemental strand, 9112070 - 9111623
Alignment:
| Q |
1 |
tcttcattgtggtagctgatgatgccattgcgaaaatgttaaatacagaaagtgaaactgaatatagagaagttgtgcaagttgtgtatgttgttgaatg |
100 |
Q |
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|||||||||||||||| |||||||||||||||||| ||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
9112070 |
tcttcattgtggtagccgatgatgccattgcgaaattgtcaaatagagaaagtgaaactgaatatagagaagttgtgcaagttgtgtatgttg---aatg |
9111974 |
T |
|
| Q |
101 |
caagatattgagaattgaaagggtatgggaaaatttataagagaagaatcatttgcagaagcacgtgagcatacagaaaatatggacaggtggagcttga |
200 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9111973 |
caagatattgagaattgaaagggtatgggaaaatatataagagaagaatcatttgcagaagcacgtgagcatacagaaaatatggacaggtggagcttga |
9111874 |
T |
|
| Q |
201 |
gaaacaataatgccaacattgtacaattgtctcatatatgccgacgttgtatcatatatgccgacatcttttttaagttggtcaaaatatatatgttctt |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
9111873 |
gaaacaataatgccaacattgtacaattgtctcatatatgccgacgttgtatcatatatgccgacatcttttttatgttggtcaaaatatatatgttctt |
9111774 |
T |
|
| Q |
301 |
ctttcattcaaaatgaggatattgtaagtttaatttttgcatcaaaaacaagtttaatttttatataa--nnnnnnnnnagatattttctaatttgtgtt |
398 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
9111773 |
ctttcattcaaaatgaggatattgtaagtttaatttttacatcaaaaacaagtttaatttttatataatttttttttttagatattttctaatttgtgtt |
9111674 |
T |
|
| Q |
399 |
ttaaaggctcgtgttaaaattttaataatagaaattttgcattgacaaata |
449 |
Q |
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| T |
9111673 |
ttaaaggctcgtgttaaaaatttaataatagaaattttgcattgacaaata |
9111623 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 446 - 695
Target Start/End: Complemental strand, 9111497 - 9111246
Alignment:
| Q |
446 |
aatatattattatgacttttaaatatttgaatgaacgaatgttaagatatttattttgatattgagtttcttaacgtttgttctcaattctacaccctcc |
545 |
Q |
| |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
9111497 |
aatatattattatgtcttttaaatatttgaatgaacgaatgttaagatatttattttgatattgagtttcttaacgtttgtcctcaattctacaccctcc |
9111398 |
T |
|
| Q |
546 |
atcaagaccttcatcctgcaaacttcatcgtgaccttcatcatgcgacctata--tccctccattttgtccctcatcttctgcgattttatcaactacga |
643 |
Q |
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||||||||||||||||||||||| |||||||||| |||||||||||||||||| ||||||||||| ||||||| ||||||||||||| ||||||||||| |
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| T |
9111397 |
atcaagaccttcatcctgcaaacctcatcgtgactttcatcatgcgacctatatctccctccatttcgtccctcgtcttctgcgatttcatcaactacga |
9111298 |
T |
|
| Q |
644 |
cgtgtagactacatcttcaacctttcatctattgagatttcgtccttcctgt |
695 |
Q |
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| T |
9111297 |
catgtagactacatcttcaacctttcatctattgagattccgtccttcctgt |
9111246 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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