View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13272_high_4 (Length: 436)
Name: NF13272_high_4
Description: NF13272
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13272_high_4 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 305; Significance: 1e-171; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 19 - 412
Target Start/End: Original strand, 4242341 - 4242734
Alignment:
| Q |
19 |
actagtcaatttgaaatattcaacgcaatgattcttggtcctcataatatccatcaaccataccnnnnnnnnnnnnnnngaaatttgtaactttcatgaa |
118 |
Q |
| |
|
|||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||| |
|
|
| T |
4242341 |
actagtcaatttgagatattcaacacaatgattcttggtcctcataatatccatcaaccataccttttttttttcttctgaaattcgtaactttcatgaa |
4242440 |
T |
|
| Q |
119 |
tgtaacattttgaattccttattgcactatttccaccctggtattatattgtgatatgcataaatctcaaactagccagaagcgttcctttacatataat |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
4242441 |
tgtaacattttgaattccttattgcactatttccaccctggtattatattgtgatatgtataaatctcaaactagccagaagagttcctttacatataat |
4242540 |
T |
|
| Q |
219 |
gcaaaacatatgtgaaattgttctgtaaaataatgcaggagttagcaaatttgctcaggtccgccacattttcataggccttctaaagtatacacatctg |
318 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
4242541 |
gcaaaatatatgtgaaattgttctgtaaaataatgcaggagttagcaaagttgctcaggtccgccactttttcataggccttctaaagtatacacatctg |
4242640 |
T |
|
| Q |
319 |
gaacaaagacaagaagaaaggttcacaccaatgaagaaggatgtgatacaagatggcaccttatggagaaaactagagtagtttttgctattgg |
412 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4242641 |
gaacaaggacaagaagaaaggttcacaccaatgaagaaggatgtgaaacaagatgggaccttatggagaaaactagagtagtttttgctattgg |
4242734 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 233 - 377
Target Start/End: Original strand, 4235542 - 4235687
Alignment:
| Q |
233 |
aaattgttctgtaaaataatgcaggagttagcaaatttgctcaggtccgccac-attttcataggccttctaaagtatacacatctggaacaaagacaag |
331 |
Q |
| |
|
|||||||| |||||||| |||||||||||||||| || ||| | |||||| ||||||||||||||| |||| ||||||| | ||||||| || ||| |
|
|
| T |
4235542 |
aaattgttacgtaaaatattgcaggagttagcaaagatggtcaaattcgccacttttttcataggccttcaaaagcatacacaacaggaacaaggaaaag |
4235641 |
T |
|
| Q |
332 |
aagaaaggttcacaccaatgaagaaggatgtgatacaagatggcac |
377 |
Q |
| |
|
||||||||||||||| ||||||||||| ||| |||||||||||| |
|
|
| T |
4235642 |
aagaaaggttcacactgatgaagaaggaattgaaacaagatggcac |
4235687 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 287 - 377
Target Start/End: Complemental strand, 28948995 - 28948905
Alignment:
| Q |
287 |
ttttcataggccttctaaagtatacacatctggaacaaagacaagaagaaaggttcacaccaatgaagaaggatgtgatacaagatggcac |
377 |
Q |
| |
|
|||||| ||||| ||||||| ||||||| | ||||||| || ||||||||||||||| || ||||||||||| |||| |||||||||||| |
|
|
| T |
28948995 |
ttttcacaggccatctaaagcatacacaacaggaacaaggaaaagaagaaaggttcaaactgatgaagaaggaagtgaaacaagatggcac |
28948905 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 288 - 377
Target Start/End: Complemental strand, 34830139 - 34830050
Alignment:
| Q |
288 |
tttcataggccttctaaagtatacacatctggaacaaagacaagaagaaaggttcacaccaatgaagaaggatgtgatacaagatggcac |
377 |
Q |
| |
|
||||| ||||| ||||||| ||||||| | ||||||| || ||||||||||||||| || ||||||||||| |||| |||||||||||| |
|
|
| T |
34830139 |
tttcacaggccatctaaagcatacacaacaggaacaaggaaaagaagaaaggttcaaactgatgaagaaggaagtgaaacaagatggcac |
34830050 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University