View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13272_low_1 (Length: 1104)
Name: NF13272_low_1
Description: NF13272
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13272_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 1002; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 1002; E-Value: 0
Query Start/End: Original strand, 19 - 1091
Target Start/End: Complemental strand, 28094774 - 28093699
Alignment:
| Q |
19 |
cataatcctcgaggttagaactgagtttggtcacaatgatccacccgaattcgacaagtacctcgaagaaaacttaggcgagtacttggttcaccaagat |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28094774 |
cataatcctcgaggttagaactgagtttggtcacaatgatccacccgaattcgacaagtacctcgaagaaaacttaggcgagtacttggttcaccaagat |
28094675 |
T |
|
| Q |
119 |
gataatgtttttgataagactattgcggaggtgctaccaaaaagagttatatgcgtttggaagccgagaaattcgacacaaccgaaggcaaagagtagtc |
218 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
28094674 |
gataatgtttttgataagactattgcagaggtgctaccaaaaagagttatatgcgtttggaagccgagaaattcgacacaaccgaaggcaaagagtagtc |
28094575 |
T |
|
| Q |
219 |
tttggagtgcagggtatctaagggacaattggattaacacagatttgccattaacaaagtttgagagtaatatgaagtatttgagccagcaggaacatgt |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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|
| T |
28094574 |
tttggagtgcagggtatctaagggacaattggattaacacagatttgccattaacaaagtttgagagtaatatgaagtatttgagccaacaggaacatgt |
28094475 |
T |
|
| Q |
319 |
tgtgtctagaaaatacttttatagagttgagaatactgttacgcctgttcctgataaccctgttttatgtgtgaaacctgtgacagaacgcattcataga |
418 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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|
| T |
28094474 |
tgtgtctagaaaatacttttatagagttgagaatactgttacgcctgttcctgataaccctgttttatgcgtgaaacctgtgacagaacgcattcataga |
28094375 |
T |
|
| Q |
419 |
tatgcaagattcttcattagtcagtgcttttctaaagggtgtggtgataagttgcagatattttctacggattttatagacttagattttgttgatgcat |
518 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28094374 |
tatgcaagattcttcattagtcagtgcttttctaaagggtgtggtgataagttgcagatattttctacggattttatagacttagattttgttgatgcat |
28094275 |
T |
|
| Q |
519 |
gtgttggactcacccatgcaagggttgagggtaaagcatgaatcaattattatgtattgtgtttgattgtttgtgtatatataagcaacagtttgcgatg |
618 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28094274 |
gtgttggactcacccatgcaagggttgagggtaaagcatgaatcaattattatgtattgtgtttgattgtttgtgtatatataagcaacagtttgcgatg |
28094175 |
T |
|
| Q |
619 |
tggtgtcatatttgtgcatatatatttattcttgcatgcatgcatttgttggaaatagaggttactagaataaaagggtcaattaaacattccatgaaaa |
718 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
28094174 |
tggtgtcatatttgtgcatatatatttattcttgcatgcatgcatttgttggaaatagaggttactagaataaaagggtcaattaaacattccatgaaaa |
28094075 |
T |
|
| Q |
719 |
aattagccacactaacactcttcatgcttaacagaaagcaaaataaaatgttgatagattattagacatctatcaaaatcctctttatgtaatattgtaa |
818 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
28094074 |
aattagccacactaacactcttcatgcttaacagaaagcaaaataaaatgttgatagattattagacatctatcaaaatcctctttatgtaatattgtaa |
28093975 |
T |
|
| Q |
819 |
tgcaacaataccacattt---aagtttatattttgaatccccttcacatttgctccggttgaatgcgtatctatgatgaaatgtgacaaaagtgctttaa |
915 |
Q |
| |
|
|||||||| | | || | || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
28093974 |
tgcaacaaaataaaatgttgatagattatattttgaatccccttcacatttgctccggttgaatgcgtatctatgatgaaatgtgacaaaagtgctttaa |
28093875 |
T |
|
| Q |
916 |
ccaaatagacttgatggatgttgggggcagagtctatgaaccattggtgcaaacacgaatactgaacgcgacattgaccaagacacttcggcacccatag |
1015 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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|
| T |
28093874 |
ccaaatagacttgatggatgttgggggcagagtctatgaaccattggtgcaaacacgaatactgaacgtgacattgaccaagacacttcggcacccatag |
28093775 |
T |
|
| Q |
1016 |
catttggaaaaatgaattaattgaatgtaatccccttccgggaccctgtgtacgcgggagctttactgcacaggtt |
1091 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||| |||| |
|
|
| T |
28093774 |
catttggaaaaatgaattaattgaatgtaatcctcttccaagaccctgtgtacgcgggagctttactgcaccggtt |
28093699 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 102; Significance: 4e-50; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 102; E-Value: 4e-50
Query Start/End: Original strand, 20 - 561
Target Start/End: Original strand, 26155984 - 26156525
Alignment:
| Q |
20 |
ataatcctcgaggttagaactgagtttggtcacaatgatccacccgaattcgacaagtacctcgaagaaaacttaggcgagtacttggttcaccaagatg |
119 |
Q |
| |
|
||||| || ||||||||||| || |||||||| |||||||||| ||||| || ||||| || |||||| | ||||| |||| ||| |||| ||||||| |
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|
| T |
26155984 |
ataattcttgaggttagaacagaatttggtcatgatgatccacctgaatttgataagtatctggaagaacaattaggtgagtttttgattcatcaagatg |
26156083 |
T |
|
| Q |
120 |
ataatgtttttgataagactattgcggaggtgctaccaaaaagagttatatgcgtttggaagccgagaaattcgacacaaccgaaggcaaagagtagtct |
219 |
Q |
| |
|
|| ||||||||| || || ||| ||||| || |||| || || ||||||||||||||||||||||| || ||| |||| || || ||| |||| ||| |
|
|
| T |
26156084 |
atcatgtttttggaaaaaccatttcggagttgttacctaagagggttatatgcgtttggaagccgagtaaatcgccacagcctaaagcagggagttctct |
26156183 |
T |
|
| Q |
220 |
ttggagtgcagggtatctaagggacaattggattaacacagatttgccattaacaaagtttgagagtaatatgaagtatttgagccagcaggaacatgtt |
319 |
Q |
| |
|
||||||||||||| | | | ||| || |||||||| |||||| | |||| ||| |||||||| | ||| | ||| ||||||| |||| || ||| |
|
|
| T |
26156184 |
gtggagtgcagggtttttgaaggataactggattaatacagatcttccatcaaccaagtttgatgggaatttaaagcatttgagtgagcaaccaccggtt |
26156283 |
T |
|
| Q |
320 |
gtgtctagaaaatacttttatagagttgagaatactgttacgcctgttcctgataaccctgttttatgtgtgaaacctgtgacagaacgcattcatagat |
419 |
Q |
| |
|
| ||| || ||||| |||||||| || |||||||| ||||| || || | |||||||||||||| |||||||||||||| || |||||||||| ||| |
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|
| T |
26156284 |
gcgtccaggaaatatttttatagggtggagaatacggttactccagtggcggataaccctgttttgtgtgtgaaacctgtaacgagacgcattcatggat |
26156383 |
T |
|
| Q |
420 |
atgcaagattcttcattagtcagtgcttttctaaagggtgtggtgataagttgcagatattttctacggattttatagacttagattttgttgatgcatg |
519 |
Q |
| |
|
|||| || |||| ||| |||||||||| |||| || | || |||| | | ||| | ||||| || |||||||| || ||||||||||||||||| |
|
|
| T |
26156384 |
atgctaggctctttattgctcagtgctttgctaagggatatgcggataggattcaggtcttttccaccgattttattgatgaggattttgttgatgcatg |
26156483 |
T |
|
| Q |
520 |
tgttggactcacccatgcaagggttgagggtaaagcatgaat |
561 |
Q |
| |
|
|||||||||||| |||||||||||||| || ||||| ||||| |
|
|
| T |
26156484 |
tgttggactcactcatgcaagggttgaaggaaaagcctgaat |
26156525 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 102; E-Value: 4e-50
Query Start/End: Original strand, 20 - 561
Target Start/End: Original strand, 26169282 - 26169823
Alignment:
| Q |
20 |
ataatcctcgaggttagaactgagtttggtcacaatgatccacccgaattcgacaagtacctcgaagaaaacttaggcgagtacttggttcaccaagatg |
119 |
Q |
| |
|
||||| || ||||||||||| || |||||||| |||||||||| ||||| || ||||| || |||||| | ||||| |||| ||| |||| ||||||| |
|
|
| T |
26169282 |
ataattcttgaggttagaacagaatttggtcatgatgatccacctgaatttgataagtatctggaagaacaattaggtgagtttttgattcatcaagatg |
26169381 |
T |
|
| Q |
120 |
ataatgtttttgataagactattgcggaggtgctaccaaaaagagttatatgcgtttggaagccgagaaattcgacacaaccgaaggcaaagagtagtct |
219 |
Q |
| |
|
|| ||||||||| || || ||| ||||| || |||| || || ||||||||||||||||||||||| || ||| |||| || || ||| |||| ||| |
|
|
| T |
26169382 |
atcatgtttttggaaaaaccatttcggagttgttacctaagagggttatatgcgtttggaagccgagtaaatcgccacagcctaaagcagggagttctct |
26169481 |
T |
|
| Q |
220 |
ttggagtgcagggtatctaagggacaattggattaacacagatttgccattaacaaagtttgagagtaatatgaagtatttgagccagcaggaacatgtt |
319 |
Q |
| |
|
||||||||||||| | | | ||| || |||||||| |||||| | |||| ||| |||||||| | ||| | ||| ||||||| |||| || ||| |
|
|
| T |
26169482 |
gtggagtgcagggtttttgaaggataactggattaatacagatcttccatcaaccaagtttgatgggaatttaaagcatttgagtgagcaaccaccggtt |
26169581 |
T |
|
| Q |
320 |
gtgtctagaaaatacttttatagagttgagaatactgttacgcctgttcctgataaccctgttttatgtgtgaaacctgtgacagaacgcattcatagat |
419 |
Q |
| |
|
| ||| || ||||| |||||||| || |||||||| ||||| || || | |||||||||||||| |||||||||||||| || |||||||||| ||| |
|
|
| T |
26169582 |
gcgtccaggaaatatttttatagggtggagaatacggttactccagtggcggataaccctgttttgtgtgtgaaacctgtaacgagacgcattcatggat |
26169681 |
T |
|
| Q |
420 |
atgcaagattcttcattagtcagtgcttttctaaagggtgtggtgataagttgcagatattttctacggattttatagacttagattttgttgatgcatg |
519 |
Q |
| |
|
|||| || |||| ||| |||||||||| |||| || | || |||| | | ||| | ||||| || |||||||| || ||||||||||||||||| |
|
|
| T |
26169682 |
atgctaggctctttattgctcagtgctttgctaagggatatgcggataggattcaggtcttttccaccgattttattgatgaggattttgttgatgcatg |
26169781 |
T |
|
| Q |
520 |
tgttggactcacccatgcaagggttgagggtaaagcatgaat |
561 |
Q |
| |
|
|||||||||||| |||||||||||||| || ||||| ||||| |
|
|
| T |
26169782 |
tgttggactcactcatgcaagggttgaaggaaaagcctgaat |
26169823 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.0000000000004; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 504 - 555
Target Start/End: Complemental strand, 55164595 - 55164544
Alignment:
| Q |
504 |
attttgttgatgcatgtgttggactcacccatgcaagggttgagggtaaagc |
555 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||| || ||||| |
|
|
| T |
55164595 |
attttgttgatgcatgtgttggactcactcatgcaagggttgaaggaaaagc |
55164544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 1017 - 1046
Target Start/End: Original strand, 41330312 - 41330341
Alignment:
| Q |
1017 |
atttggaaaaatgaattaattgaatgtaat |
1046 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
41330312 |
atttggaaaaatgaattaattgaatgtaat |
41330341 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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