View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13272_low_7 (Length: 233)
Name: NF13272_low_7
Description: NF13272
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13272_low_7 |
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| [»] scaffold0413 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 99; Significance: 5e-49; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 65 - 182
Target Start/End: Original strand, 10752375 - 10752493
Alignment:
| Q |
65 |
gaatggctcgtgtaattgaatgagtgagaaag-ccaactgagtgtgagggaattgaaatatgtagagtggctaatatgtgcctagtttttaggaaccaaa |
163 |
Q |
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| T |
10752375 |
gaatggctcgtgtaattgaatgagtgagaaaaaccaactgagggtgagggaattgaaatatgtagagtagctaatatgtgcctagtttttaggaaccaaa |
10752474 |
T |
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| Q |
164 |
taaccaatttcattgacct |
182 |
Q |
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| T |
10752475 |
taaccaatttcattgacct |
10752493 |
T |
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Target: scaffold0413 (Bit Score: 94; Significance: 5e-46; HSPs: 1)
Name: scaffold0413
Description:
Target: scaffold0413; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 69 - 182
Target Start/End: Complemental strand, 8155 - 8042
Alignment:
| Q |
69 |
ggctcgtgtaattgaatgagtgagaaagccaactgagtgtgagggaattgaaatatgtagagtggctaatatgtgcctagtttttaggaaccaaataacc |
168 |
Q |
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| T |
8155 |
ggctcgtgtaattgaatgagtgagaaaaccaattgagggtgagggaattgaaatatgtagggtagctaatatgtgcctagtttttaggaaccaaataacc |
8056 |
T |
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| Q |
169 |
aatttcattgacct |
182 |
Q |
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| T |
8055 |
aatttcattgacct |
8042 |
T |
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Target: chr7 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 3 - 92
Target Start/End: Complemental strand, 9742188 - 9742098
Alignment:
| Q |
3 |
gtttggaaaagcatggtttagctaaccggaagaaaa-tggacgcaaggaattagagaggagtggaatggctcgtgtaattgaatgagtgag |
92 |
Q |
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| T |
9742188 |
gtttggaaaagaaaggtttatctaaccagaagaaaaatggatgcaaggaattagagaggattgcagtggctcgtgtaattgaacgagtgag |
9742098 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 4 - 92
Target Start/End: Original strand, 31519678 - 31519767
Alignment:
| Q |
4 |
tttggaaaagcatggtttagctaaccggaagaa-aatggacgcaaggaattagagaggagtggaatggctcgtgtaattgaatgagtgag |
92 |
Q |
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| T |
31519678 |
tttggaaaagaaaggtttatctaaccagaagaagaatggatgcaaggaattagagaggattgcagtggctcgtgtaattgaacgagtgag |
31519767 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 82 - 182
Target Start/End: Original strand, 21232586 - 21232680
Alignment:
| Q |
82 |
gaatgagtgagaaagccaactgagtgtgagggaattgaaatatgtagagtggctaatatgtgcctagtttttaggaaccaaataaccaatttcattgacc |
181 |
Q |
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| T |
21232586 |
gaatgagtgagaaa-ccaaccgattgtgagtgaattgaaatacatag-----ctaatatgtgcctagtttttaggaaccaaataactaacttcattgacc |
21232679 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 133 - 182
Target Start/End: Original strand, 16131973 - 16132022
Alignment:
| Q |
133 |
gctaatatgtgcctagtttttaggaaccaaataaccaatttcattgacct |
182 |
Q |
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| T |
16131973 |
gctaatatgtgcctagtttttaggaaccaaataatcaacttcattgacct |
16132022 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 146 - 182
Target Start/End: Complemental strand, 14490178 - 14490142
Alignment:
| Q |
146 |
tagtttttaggaaccaaataaccaatttcattgacct |
182 |
Q |
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| T |
14490178 |
tagtttttaggaaccaaataaccaatttcattgacct |
14490142 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 37
Target Start/End: Complemental strand, 14490213 - 14490179
Alignment:
| Q |
3 |
gtttggaaaagcatggtttagctaaccggaagaaa |
37 |
Q |
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| T |
14490213 |
gtttggaaaagcatggtttagctaaccgaaagaaa |
14490179 |
T |
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