View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13273_high_18 (Length: 354)
Name: NF13273_high_18
Description: NF13273
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13273_high_18 |
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Alignment Details
Target: chr5 (Bit Score: 155; Significance: 3e-82; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 18 - 172
Target Start/End: Original strand, 1647261 - 1647415
Alignment:
| Q |
18 |
agaaagagacttgagatcactgcaagaactgctggtgcttcaaagacaattgaagctgaggttgacaagccacttggtctcactttaggccaaaagaatg |
117 |
Q |
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| T |
1647261 |
agaaagagacttgagatcactgcaagaactgctggtgcttcaaagacaattgaagctgaggttgacaagccacttggtctcactttaggccaaaagaatg |
1647360 |
T |
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| Q |
118 |
gtggcggtgttgttataacggtcagtatctcgctcaatttcccattaattcaatg |
172 |
Q |
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| T |
1647361 |
gtggcggtgttgttataacggtcagtatctcgctcaatttcccattaattcaatg |
1647415 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 218 - 344
Target Start/End: Original strand, 1647417 - 1647553
Alignment:
| Q |
218 |
ttgaaggcatgtctggtatccgacataagcgacacgacaccgacacatatggttaaattccaatatttcacgttctcaaaatattatt----------tg |
307 |
Q |
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| T |
1647417 |
ttgaaggcatgtctggtatccgacataagcgacacgacactgacacatatggttaaattccaatatttcacgttctcaaaatattatttgcgtcgatgtg |
1647516 |
T |
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| Q |
308 |
tcagtgttgtttcctatgtctgatatccttgtctgtg |
344 |
Q |
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| T |
1647517 |
tcagtgttgtgtcctatgtctaatatccttgtctgtg |
1647553 |
T |
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