View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13273_high_25 (Length: 314)
Name: NF13273_high_25
Description: NF13273
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13273_high_25 |
 | |
|
| [»] chr3 (7 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 286; Significance: 1e-160; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 1 - 314
Target Start/End: Original strand, 46997336 - 46997649
Alignment:
| Q |
1 |
atttgttagcatatccacttctaaatgccaatgattttcccattccacattcattcccatacatattacaactcggtgaactacccatcatcacagtata |
100 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| ||||||||||||| |||||||||||||||||||| | ||||||||||||||||||||||||||||| |
|
|
| T |
46997336 |
atttgttagcatatccacttctaactgccaatgcttttcccattccaaattcattcccatacatattaaacctcggtgaactacccatcatcacagtata |
46997435 |
T |
|
| Q |
101 |
aggatcaaaaaacagatccattcgatacacaaagggcgaacgtaaccactcttcaaccgagtttcgcaccactttatcatcatagtttgcaatagccagg |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
46997436 |
aggatcaaaaaacagatccattcgatacacaaaaggcgaacgtaaccactcttcaaccgagtttcgcaccactttatcatcataatttgcaatagccagg |
46997535 |
T |
|
| Q |
201 |
tgaatcttccatgctgcccatcctagatcattttccagcaattcccctaccgttgtttcagccctcactgcgtagatggaattcccaaaatattccttag |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46997536 |
tgaatcttccatgctgcccatcctagatcattttccagcaattcccctaccgttgtttcagccctcactgcgtagatggaattcccaaaatattccttag |
46997635 |
T |
|
| Q |
301 |
gaagaggtggttcc |
314 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
46997636 |
gaagaggtggttcc |
46997649 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 1 - 314
Target Start/End: Original strand, 46974273 - 46974586
Alignment:
| Q |
1 |
atttgttagcatatccacttctaaatgccaatgattttcccattccacattcattcccatacatattacaactcggtgaactacccatcatcacagtata |
100 |
Q |
| |
|
|||| ||||||||||||||||||| |||||| ||||||||||||| |||||||||||||||||||| | |||||||||||||||||||||||||| || |
|
|
| T |
46974273 |
atttattagcatatccacttctaactgccaaaacttttcccattccaaattcattcccatacatattaaacctcggtgaactacccatcatcacagtgta |
46974372 |
T |
|
| Q |
101 |
aggatcaaaaaacagatccattcgatacacaaagggcgaacgtaaccactcttcaaccgagtttcgcaccactttatcatcatagtttgcaatagccagg |
200 |
Q |
| |
|
|||||||||||||| ||| ||||||||||||| || ||||| ||||||||||||||||| | ||||||||||||||||||| ||| ||| ||| || |
|
|
| T |
46974373 |
aggatcaaaaaacaaatctgttcgatacacaaaaggagaacgaaaccactcttcaaccgacctacgcaccactttatcatcatgatttacaacagctaga |
46974472 |
T |
|
| Q |
201 |
tgaatcttccatgctgcccatcctagatcattttccagcaattcccctaccgttgtttcagccctcactgcgtagatggaattcccaaaatattccttag |
300 |
Q |
| |
|
||||| |||||||||||||||||||||||||| |||||||||||||||||||| |||||||| ||||| || | | |||||||||||||||||||| | |
|
|
| T |
46974473 |
tgaattttccatgctgcccatcctagatcattctccagcaattcccctaccgtcgtttcagcactcaccgcatgaagtgaattcccaaaatattccttcg |
46974572 |
T |
|
| Q |
301 |
gaagaggtggttcc |
314 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
46974573 |
gaagaggtggttcc |
46974586 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 1 - 314
Target Start/End: Original strand, 46980262 - 46980575
Alignment:
| Q |
1 |
atttgttagcatatccacttctaaatgccaatgattttcccattccacattcattcccatacatattacaactcggtgaactacccatcatcacagtata |
100 |
Q |
| |
|
|||||||||||||||||||||||| |||||| | |||||||||||| ||||||| |||||| ||||| | |||||||||| || |||||||||||||| |
|
|
| T |
46980262 |
atttgttagcatatccacttctaactgccaaagcttttcccattccgaattcatttccatacgtattaaacctcggtgaaccacttatcatcacagtata |
46980361 |
T |
|
| Q |
101 |
aggatcaaaaaacagatccattcgatacacaaagggcgaacgtaaccactcttcaaccgagtttcgcaccactttatcatcatagtttgcaatagccagg |
200 |
Q |
| |
|
||||||||| |||| |||||||||||||| ||| || ||||| ||||||| ||||||||| | ||||||||||||||||| | ||||||||||||| |
|
|
| T |
46980362 |
aggatcaaagaacaaatccattcgatacaaaaaaggagaacgaaaccacttttcaaccgacctacgcaccactttatcatcgtgatttgcaatagccaca |
46980461 |
T |
|
| Q |
201 |
tgaatcttccatgctgcccatcctagatcattttccagcaattcccctaccgttgtttcagccctcactgcgtagatggaattcccaaaatattccttag |
300 |
Q |
| |
|
||||| |||||||||||||||||||||||||| |||||||| || |||||||| |||||||| |||||| | || | |||||||||||||||||||||| |
|
|
| T |
46980462 |
tgaattttccatgctgcccatcctagatcattctccagcaactctcctaccgtcgtttcagcactcactacataaagtgaattcccaaaatattccttag |
46980561 |
T |
|
| Q |
301 |
gaagaggtggttcc |
314 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
46980562 |
gaagaggtggttcc |
46980575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 161; E-Value: 7e-86
Query Start/End: Original strand, 1 - 313
Target Start/End: Original strand, 47000999 - 47001311
Alignment:
| Q |
1 |
atttgttagcatatccacttctaaatgccaatgattttcccattccacattcattcccatacatattacaactcggtgaactacccatcatcacagtata |
100 |
Q |
| |
|
||||||||||||||| |||||||| |||||||| ||||||||||||| |||||||||||||||||||| | || ||||| |||||||||||||||||||| |
|
|
| T |
47000999 |
atttgttagcatatcaacttctaactgccaatgcttttcccattccaaattcattcccatacatattaaaccttggtgagctacccatcatcacagtata |
47001098 |
T |
|
| Q |
101 |
aggatcaaaaaacagatccattcgatacacaaagggcgaacgtaaccactcttcaaccgagtttcgcaccactttatcatcatagtttgcaatagccagg |
200 |
Q |
| |
|
||||||||| |||||||||||||||||||||| || ||||||| |||||||||||| | ||| |||||||||||||||||| || ||||||||||| |
|
|
| T |
47001099 |
aggatcaaagaacagatccattcgatacacaataggagaacgtatccactcttcaacataattttgcaccactttatcatcatgattcgcaatagccaga |
47001198 |
T |
|
| Q |
201 |
tgaatcttccatgctgcccatcctagatcattttccagcaattcccctaccgttgtttcagccctcactgcgtagatggaattcccaaaatattccttag |
300 |
Q |
| |
|
||||||||||||||||||||||||| |||||| | ||| |||||||| ||||||||||| | ||||||| || ||||||||||||||||| || | |
|
|
| T |
47001199 |
tgaatcttccatgctgcccatcctaaatcattcctgaacaactcccctactgttgtttcagcaccaactgcgtgaatcgaattcccaaaatattcatttg |
47001298 |
T |
|
| Q |
301 |
gaagaggtggttc |
313 |
Q |
| |
|
||||||| ||||| |
|
|
| T |
47001299 |
gaagaggcggttc |
47001311 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 3 - 306
Target Start/End: Original strand, 46995078 - 46995381
Alignment:
| Q |
3 |
ttgttagcatatccacttctaaatgccaatgattttcccattccacattcattcccatacatattacaactcggtgaactacccatcatcacagtataag |
102 |
Q |
| |
|
|||||||||||||||||||||| | |||| | ||||||||||||| ||||| |||||||||||||| | || |||||||||||||||||||||| |||| |
|
|
| T |
46995078 |
ttgttagcatatccacttctaactcccaaagcttttcccattccaaattcactcccatacatattaaaccttggtgaactacccatcatcacagagtaag |
46995177 |
T |
|
| Q |
103 |
gatcaaaaaacagatccattcgatacacaaagggcgaacgtaaccactcttcaaccgagtttcgcaccactttatcatcatagtttgcaatagccaggtg |
202 |
Q |
| |
|
|||||| |||| ||||||||| ||| | || || || ||||||||||| || | | |||||| ||| | | |||||| ||||||||||| || || |
|
|
| T |
46995178 |
gatcaaccaacatgtccattcgaaccactataggagaccgcaaccactcttccactaattgtcgcacaactctgtgatcatattttgcaatagctagatg |
46995277 |
T |
|
| Q |
203 |
aatcttccatgctgcccatcctagatcattttccagcaattcccctaccgttgtttcagccctcactgcgtagatggaattcccaaaatattccttagga |
302 |
Q |
| |
|
||||||||||| |||| ||||||| |||| |||||||| || ||| |||||||||| ||||||||||| | |||||||||||||||||||||||| |
|
|
| T |
46995278 |
aatcttccatgatgccaatcctagtccattctccagcaactcaccttttgttgtttcagtgctcactgcgtaaactgaattcccaaaatattccttagga |
46995377 |
T |
|
| Q |
303 |
agag |
306 |
Q |
| |
|
|||| |
|
|
| T |
46995378 |
agag |
46995381 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 206 - 258
Target Start/End: Original strand, 46951039 - 46951091
Alignment:
| Q |
206 |
cttccatgctgcccatcctagatcattttccagcaattcccctaccgttgttt |
258 |
Q |
| |
|
|||||||||||||||||| | ||||||||| |||||||| ||||| ||||||| |
|
|
| T |
46951039 |
cttccatgctgcccatcccaaatcattttctagcaattcacctacggttgttt |
46951091 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 46950834 - 46950915
Alignment:
| Q |
1 |
atttgttagcatatccacttctaaatgccaatgattttcccattccacattcattcccatacatattacaactcggtgaact |
82 |
Q |
| |
|
||||||| ||||| ||||| || ||||| || ||||||||||||| ||||||| |||||||||||| | || |||||||| |
|
|
| T |
46950834 |
atttgtttgcataaccactcaaaactgccactggttttcccattccaaattcatttccatacatattaaaccttggtgaact |
46950915 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University