View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13273_high_34 (Length: 247)
Name: NF13273_high_34
Description: NF13273
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13273_high_34 |
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Alignment Details
Target: chr6 (Bit Score: 154; Significance: 8e-82; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 52 - 234
Target Start/End: Original strand, 31537224 - 31537406
Alignment:
| Q |
52 |
agcaataaccaaattaattccatattataacaaaagcttattcnnnnnnngttataacagaagcagatatagtgattgcataatattgaaagaagaagaa |
151 |
Q |
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| T |
31537224 |
agcaataaccaaattaattccatattataacaaaagcttattcaaaaaaagttataacagaagcagatatagtgattgcataatattgaaagaagaagaa |
31537323 |
T |
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| Q |
152 |
aaggatcaaagtgtgcgtgacatacccattatattctcaaagtaagctattttgaaccttgtattcaaatgttctgtgctcct |
234 |
Q |
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| T |
31537324 |
aaggatcaaagtgtgcgtgacatacccattatattctcaaagtaagccattttgaatcttgtattcaaatgttctgtgctcct |
31537406 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 141 - 234
Target Start/End: Original strand, 31532031 - 31532124
Alignment:
| Q |
141 |
aagaagaagaaaaggatcaaagtgtgcgtgacatacccattatattctcaaagtaagctattttgaaccttgtattcaaatgttctgtgctcct |
234 |
Q |
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| T |
31532031 |
aagaagaagaaaaggatcaaagtatgcgtgagatacccattatattctcaaagtaagcaattttgaaccttgtattcaaatgttatgtgctcct |
31532124 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 52 - 94
Target Start/End: Original strand, 31529795 - 31529836
Alignment:
| Q |
52 |
agcaataaccaaattaattccatattataacaaaagcttattc |
94 |
Q |
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| T |
31529795 |
agcaataaccaa-ttaattccatattataacagaagcttattc |
31529836 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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