View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13273_high_38 (Length: 238)
Name: NF13273_high_38
Description: NF13273
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13273_high_38 |
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Alignment Details
Target: chr1 (Bit Score: 126; Significance: 4e-65; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 59 - 222
Target Start/End: Original strand, 19684840 - 19684999
Alignment:
| Q |
59 |
gtgcaagtggtgttttgtcgaaacaaaacgacgacgagagaagagggaaaaatcaatcaatcgagggtttcgttcttctcgtcttcatcatcctcaattc |
158 |
Q |
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| T |
19684840 |
gtgcaagtggtgttt-gtcgaaacaaaacgagga---gagaagagggaaaaatcaatcaatcgagggtttcgttcttctcgtcttcatcatcctcaattc |
19684935 |
T |
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| Q |
159 |
acagttacttgccctcaaatccccactcacactcgtatgcctcctttctccttcccccattttc |
222 |
Q |
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|||||||||||||||||||||||||| || ||||||||||| |||||||||||||||||||||| |
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| T |
19684936 |
acagttacttgccctcaaatccccacacatactcgtatgccccctttctccttcccccattttc |
19684999 |
T |
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