View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13273_high_4 (Length: 573)
Name: NF13273_high_4
Description: NF13273
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13273_high_4 |
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| [»] scaffold0066 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 525; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 525; E-Value: 0
Query Start/End: Original strand, 11 - 555
Target Start/End: Original strand, 7425576 - 7426120
Alignment:
| Q |
11 |
cacagattatttacgctgtgtctgaaatatccgaagtcgtggcagattgacaaattgttgattcatagtctgaggtgggggtctgtctgtggtgttttct |
110 |
Q |
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| T |
7425576 |
cacagattatttatgctgtgtctgaaatatccgaagtcgtggcagattgacaaattgttgattcatagtctgaggtgggggtctgtctgtggtgttttct |
7425675 |
T |
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| Q |
111 |
tgttgttgctgactgtggtgtttctgtcggtctgctgaagaggggatgttctcttaatgtctcgagcttttgtttggaagcagagggagtcttgtggtgc |
210 |
Q |
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| T |
7425676 |
tgttgttgctgactgtggtgtttctgtcggtctgctgaagagggaatgttctcttaatgtctcgagcttttgtttggaagcagagggagtcttgtggtgc |
7425775 |
T |
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| Q |
211 |
tgtgagtataggagctaaggtggttattattaaattacttcaatttggtagcaagaggatatggctttagcagggttgtaatttttggcatttgagagtg |
310 |
Q |
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| T |
7425776 |
tgtgagtataggagctaaggtggttattattaaattacttcaatttggtagcaagaggatatggctttagcagggttataatttttggcatttgagagtg |
7425875 |
T |
|
| Q |
311 |
ccttttctgtaacaggtgcaggagtctgttgtagtgcagcagggacatctcattttgaatgcagatatagcaaggcgctgacagcaatattggtggtatt |
410 |
Q |
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| T |
7425876 |
ccttttctgtaacaggtgcaggcgtctgttgtagtgcagcagggacatctcattttgaatgcagatatagcaaggcgctgacagcaatattggtggtatt |
7425975 |
T |
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| Q |
411 |
gcaacagtataattcattaattgagaaaatattttttctttctcagggcatattaagatgttattctattctcttaaatggcagcagcatttgcaagttg |
510 |
Q |
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| T |
7425976 |
gcaacagtataattcattaattgagaaaatattttttctttctcagggcatattaagatgttattctattctcttaaatggcagcagcatttgcaagttg |
7426075 |
T |
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| Q |
511 |
ttttcaaaattatgcgttaaattttcaacaattgcaatcttggca |
555 |
Q |
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| T |
7426076 |
ttttcaaaattatgcgttaaatttttaacaattgcaatcttggca |
7426120 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0066 (Bit Score: 96; Significance: 8e-47; HSPs: 1)
Name: scaffold0066
Description:
Target: scaffold0066; HSP #1
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 27 - 550
Target Start/End: Complemental strand, 18139 - 17602
Alignment:
| Q |
27 |
tgtgtctgaaatatccgaagtcgtggcagattgacaaattgttgattcatagtctgaggtgggggtctgtctgtggtgttttcttgttgttgctgactgt |
126 |
Q |
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| T |
18139 |
tgtgtctgaaatatccgaagttgcggcagtttggcagttttttgattcatagtctgaggagggggtgtgtctatggtgctttcttgctgctgctggctgt |
18040 |
T |
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| Q |
127 |
ggtgtttctgtcggtctgctgaagaggggatgttctcttaatgtctcgagcttttgtttggaagcagagggagtcttgtggtgctgtgagtat--aggag |
224 |
Q |
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| T |
18039 |
ggtgtttcggtcggccgtctgtagaggggacattctcatagggtctggtgcttttggttggaagcagagggagtcttatgatgctgtttgttttaagaag |
17940 |
T |
|
| Q |
225 |
ct-aaggtggttattattaaattacttcaatttggtagcaa------gaggatatggctttagcagggttgtaatttttggcatttgagagtgccttttc |
317 |
Q |
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| T |
17939 |
ctaaatgtggttattattcaatcagttcaagttgacagcaagaagaggaggctttggctttagcagttctaatatttttggcatttgagggcgttttttc |
17840 |
T |
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| Q |
318 |
tgtaacaggtgcaggagtctgttgtagtgcagcaggga--------catctcattttgaatgcagatatagcaaggcgctgacagcaatattggtggtat |
409 |
Q |
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| T |
17839 |
tgtaacaggtacaggcatattatttagtgcaacatggattttctttcatctcagtttgattgcatatatagcaaggtgctggcagcaacattggtggtat |
17740 |
T |
|
| Q |
410 |
tgcaacagtataattcattaattgagaaaatattttttctttctcagggcatattaagatgttattctattctcttaaatggcagcagcatttgcaagtt |
509 |
Q |
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||||||| ||||| ||||||||||||| | ||||||| |||||||| || || |||| ||||||||||||||||||||||||| | | ||| |
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| T |
17739 |
cctaacagtagaattccttaattgagaaaaga---tttctttgtcagggcaggttgagttgttcagctattctcttaaatggcagcagcatctttatgtt |
17643 |
T |
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| Q |
510 |
gttttcaaaattatgcgttaaattttcaacaattgcaatct |
550 |
Q |
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| T |
17642 |
gttttcatcattatgtgttaaattttcgactattgcaatct |
17602 |
T |
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