View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13273_high_6 (Length: 524)
Name: NF13273_high_6
Description: NF13273
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13273_high_6 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 238 - 510
Target Start/End: Complemental strand, 34967131 - 34966859
Alignment:
| Q |
238 |
gctatattgtgagagtcaatgtatgtggtggtcatacaatgacggtgtatggatcagaatgttggtatgctgagagacaacatgcaaagaaaggacaccc |
337 |
Q |
| |
|
||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
34967131 |
gctatattgtgagagtcaatgtatgcggtgatcatacaatgacggtgtatggatcagaatgttggtatgctgagagacaacatgcatagaaaggacaccc |
34967032 |
T |
|
| Q |
338 |
acttaatgataaattttattagtaatgacgaaagatgtattagtgtgttataaaatgaagacagttgttgcttgaagaaaagggtagcttcagttgaagt |
437 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
34967031 |
acttaatgataaattttattagtaatgacgaaagatatattagtgtgttataaaatgaagacagttgttgcttgaagaaaagggtagcttcaattgaagt |
34966932 |
T |
|
| Q |
438 |
ccaaatggtactgaatggtataaataggttgtaatttgtagctgtgttgtacagagacagatatgtaattttt |
510 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
34966931 |
ccaaatggtactgaatggtataaataggttgtaatttgtagctgtgttgtacagagacagatatgtaaatttt |
34966859 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 100; Significance: 3e-49; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 98 - 245
Target Start/End: Complemental strand, 18426326 - 18426180
Alignment:
| Q |
98 |
gaaaagcttaagaggagctgaaatgatgtaagccattgtttctactttgaattgcatattcatgttttgctcctgattgacgttgtccatactgttttaa |
197 |
Q |
| |
|
||||| || ||||| ||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||| |
|
|
| T |
18426326 |
gaaaaactcaagagaagctgaaatgatgtaagcctgtatttctactttgaattgcatattcatgttttgctcctgtttgacgttgtccatactg-tttaa |
18426228 |
T |
|
| Q |
198 |
ttgtcagttttgcttttatttctttaataagaataagaatgctatatt |
245 |
Q |
| |
|
|||||||||||| ||||| ||||||||||||||||||| ||||||||| |
|
|
| T |
18426227 |
ttgtcagttttggttttagttctttaataagaataagagtgctatatt |
18426180 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 246 - 316
Target Start/End: Complemental strand, 18425429 - 18425359
Alignment:
| Q |
246 |
gtgagagtcaatgtatgtggtggtcatacaatgacggtgtatggatcagaatgttggtatgctgagagaca |
316 |
Q |
| |
|
||||| ||||||| |||||||| |||| |||| | |||| ||||||||||||| ||| ||||||||||||| |
|
|
| T |
18425429 |
gtgagtgtcaatgaatgtggtgatcatccaattatggtgcatggatcagaatgctgggatgctgagagaca |
18425359 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University