View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13273_low_1 (Length: 787)

Name: NF13273_low_1
Description: NF13273
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13273_low_1
NF13273_low_1
[»] chr8 (9 HSPs)
chr8 (487-728)||(34741975-34742216)
chr8 (338-432)||(19430733-19430826)
chr8 (338-432)||(19436175-19436268)
chr8 (338-432)||(19566882-19566975)
chr8 (338-432)||(19572324-19572417)
chr8 (338-432)||(31031256-31031349)
chr8 (338-432)||(33616064-33616157)
chr8 (338-432)||(13584870-13584968)
chr8 (723-769)||(34742302-34742348)
[»] chr3 (5 HSPs)
chr3 (337-432)||(13022749-13022843)
chr3 (337-432)||(53120221-53120315)
chr3 (338-432)||(33088616-33088709)
chr3 (338-432)||(38436270-38436363)
chr3 (367-432)||(20811112-20811177)
[»] chr1 (12 HSPs)
chr1 (54-297)||(11979994-11980237)
chr1 (333-429)||(38734829-38734924)
chr1 (337-432)||(26650427-26650521)
chr1 (338-432)||(13891505-13891598)
chr1 (338-432)||(14582448-14582541)
chr1 (34-238)||(11953785-11953989)
chr1 (338-432)||(5602170-5602263)
chr1 (338-425)||(39746674-39746760)
chr1 (338-432)||(31289455-31289547)
chr1 (338-432)||(12179406-12179494)
chr1 (338-432)||(10106741-10106835)
chr1 (582-663)||(11954460-11954541)
[»] scaffold0132 (2 HSPs)
scaffold0132 (337-432)||(2420-2514)
scaffold0132 (337-432)||(10380-10474)
[»] chr7 (7 HSPs)
chr7 (338-429)||(28291842-28291932)
chr7 (337-432)||(24529090-24529184)
chr7 (338-432)||(9973969-9974062)
chr7 (338-432)||(33227019-33227113)
chr7 (338-429)||(7358037-7358127)
chr7 (338-397)||(10437398-10437456)
chr7 (338-397)||(10451108-10451166)
[»] chr6 (4 HSPs)
chr6 (338-432)||(19478838-19478931)
chr6 (369-432)||(14450626-14450689)
chr6 (338-432)||(10485799-10485890)
chr6 (338-432)||(17289607-17289697)
[»] chr2 (3 HSPs)
chr2 (338-432)||(42915263-42915356)
chr2 (338-432)||(5089778-5089872)
chr2 (338-431)||(39959865-39959952)
[»] chr4 (4 HSPs)
chr4 (338-432)||(10119806-10119899)
chr4 (338-429)||(24490797-24490882)
chr4 (338-432)||(653688-653782)
chr4 (336-405)||(8082771-8082837)
[»] scaffold0011 (2 HSPs)
scaffold0011 (338-432)||(2326-2420)
scaffold0011 (338-432)||(7580-7674)
[»] chr5 (3 HSPs)
chr5 (338-432)||(13581981-13582075)
chr5 (392-432)||(14374824-14374864)
chr5 (395-432)||(7805773-7805810)
[»] scaffold0067 (1 HSPs)
scaffold0067 (338-432)||(33305-33392)


Alignment Details
Target: chr8 (Bit Score: 204; Significance: 1e-111; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 487 - 728
Target Start/End: Original strand, 34741975 - 34742216
Alignment:
Q  487 ttggacagatacctgcaagtattgagctgcta----ggcttttctaatttcaaccctattgccatcggcaacacactttacttcatgaatacagctcatg 582  Q
    ||||||||||||||||||||||||||||||||    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34741975 ttggacagatacctgcaagtattgagctgctagctaggcttttctaatttcaaccctattgccatcggcaacacactttacttcatgaatacagctcatg 34742074  T
Q  583 aagggattgtttcttgcaaaacgtcaactggggtttgggcacaccacttgatcccaacgccattgctatcatctgacttaaaattaattggtccagtgta 682  Q
    ||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    |||||||||||||||    
T  34742075 aagggattgtttcttccaaaatgtcaactggggtttgggcacaccacttgatcccaacgccattgctatcatctgacttaa----aattggtccagtgta 34742170  T
Q  683 atgcgcggatcatgcttgtagttgtgggtatgtatgcatatgggag 728  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  34742171 atgcgcggatcatgcttgtagttgtgggtatgtatgcatatgggag 34742216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 83; E-Value: 7e-39
Query Start/End: Original strand, 338 - 432
Target Start/End: Complemental strand, 19430826 - 19430733
Alignment:
Q  338 tgttggaacactagttaaatctaatgagaaaaattggataagaaaaacacaatataagaactagtgtgagtgtgtgacttaaaaatgtcccacat 432  Q
    ||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19430826 tgttggaacactagttaaatctagtgagaaaa-ttggataagaaaaacacaatataagaactagtgtgagtgtgtgacttaaaaatgtcccacat 19430733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 83; E-Value: 7e-39
Query Start/End: Original strand, 338 - 432
Target Start/End: Complemental strand, 19436268 - 19436175
Alignment:
Q  338 tgttggaacactagttaaatctaatgagaaaaattggataagaaaaacacaatataagaactagtgtgagtgtgtgacttaaaaatgtcccacat 432  Q
    ||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19436268 tgttggaacactagttaaatctagtgagaaaa-ttggataagaaaaacacaatataagaactagtgtgagtgtgtgacttaaaaatgtcccacat 19436175  T

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Target: chr8; HSP #4
Raw Score: 83; E-Value: 7e-39
Query Start/End: Original strand, 338 - 432
Target Start/End: Complemental strand, 19566975 - 19566882
Alignment:
Q  338 tgttggaacactagttaaatctaatgagaaaaattggataagaaaaacacaatataagaactagtgtgagtgtgtgacttaaaaatgtcccacat 432  Q
    ||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19566975 tgttggaacactagttaaatctagtgagaaaa-ttggataagaaaaacacaatataagaactagtgtgagtgtgtgacttaaaaatgtcccacat 19566882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 83; E-Value: 7e-39
Query Start/End: Original strand, 338 - 432
Target Start/End: Complemental strand, 19572417 - 19572324
Alignment:
Q  338 tgttggaacactagttaaatctaatgagaaaaattggataagaaaaacacaatataagaactagtgtgagtgtgtgacttaaaaatgtcccacat 432  Q
    ||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19572417 tgttggaacactagttaaatctagtgagaaaa-ttggataagaaaaacacaatataagaactagtgtgagtgtgtgacttaaaaatgtcccacat 19572324  T

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Target: chr8; HSP #6
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 338 - 432
Target Start/End: Complemental strand, 31031349 - 31031256
Alignment:
Q  338 tgttggaacactagttaaatctaatgagaaaaattggataagaaaaacacaatataagaactagtgtgagtgtgtgacttaaaaatgtcccacat 432  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||    
T  31031349 tgttggaacactagttaaatctaatgagaaaa-ttggataagaaaaacacattataagaactagtgtgagtgtgtgacttaaaaatgtctcacat 31031256  T

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Target: chr8; HSP #7
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 338 - 432
Target Start/End: Original strand, 33616064 - 33616157
Alignment:
Q  338 tgttggaacactagttaaatctaatgagaaaaattggataagaaaaacacaatataagaactagtgtgagtgtgtgacttaaaaatgtcccacat 432  Q
    |||||||||| |||||||||||| |||||||| |||||||||||||| ||||||||||||||||||||||| |||| |||||||||||| |||||    
T  33616064 tgttggaacattagttaaatctagtgagaaaa-ttggataagaaaaatacaatataagaactagtgtgagtatgtggcttaaaaatgtctcacat 33616157  T

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Target: chr8; HSP #8
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 338 - 432
Target Start/End: Complemental strand, 13584968 - 13584870
Alignment:
Q  338 tgttggaacactagttaaatctaatgagaaaaattggataagaaaaa-----cacaatataagaactagtgtgagtgtgtgacttaaaaatgtcccacat 432  Q
    ||||||||||||||||||||||| |||||||| ||||||||||||||     ||||||||||||| ||||||||| |||||| |||||||||||||||||    
T  13584968 tgttggaacactagttaaatctagtgagaaaa-ttggataagaaaaaaaaaacacaatataagaattagtgtgagcgtgtgatttaaaaatgtcccacat 13584870  T

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Target: chr8; HSP #9
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 723 - 769
Target Start/End: Original strand, 34742302 - 34742348
Alignment:
Q  723 tgggagacaaaggtttgatcatgttatacttgaaatcatgttataat 769  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||    
T  34742302 tgggagacaaatgtttgatcatgttatacttgaaatcatgttataat 34742348  T

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Target: chr3 (Bit Score: 84; Significance: 2e-39; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 337 - 432
Target Start/End: Complemental strand, 13022843 - 13022749
Alignment:
Q  337 gtgttggaacactagttaaatctaatgagaaaaattggataagaaaaacacaatataagaactagtgtgagtgtgtgacttaaaaatgtcccacat 432  Q
    |||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13022843 gtgttggaacactagttaaatctagtgagaaaa-ttggataagaaaaacacaatataagaactagtgtgagtgtgtgacttaaaaatgtcccacat 13022749  T

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Target: chr3; HSP #2
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 337 - 432
Target Start/End: Complemental strand, 53120315 - 53120221
Alignment:
Q  337 gtgttggaacactagttaaatctaatgagaaaaattggataagaaaaacacaatataagaactagtgtgagtgtgtgacttaaaaatgtcccacat 432  Q
    |||||||||||||||||||||||| |||||||| ||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||    
T  53120315 gtgttggaacactagttaaatctagtgagaaaa-ttggataagaaaaacacgatgtaagaactagtgtgagtgtgtgacttaaaaatgtcccacat 53120221  T

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Target: chr3; HSP #3
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 338 - 432
Target Start/End: Original strand, 33088616 - 33088709
Alignment:
Q  338 tgttggaacactagttaaatctaatgagaaaaattggataagaaaaacacaatataagaactagtgtgagtgtgtgacttaaaaatgtcccacat 432  Q
    ||||||||||||||||||||||| |||||||| |||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||    
T  33088616 tgttggaacactagttaaatctagtgagaaaa-ttggataagaaaaacataatgtaagaactagtgtgagtgtgtgacttaaaaatgtcccacat 33088709  T

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Target: chr3; HSP #4
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 338 - 432
Target Start/End: Original strand, 38436270 - 38436363
Alignment:
Q  338 tgttggaacactagttaaatctaatgagaaaaattggataagaaaaacacaatataagaactagtgtgagtgtgtgacttaaaaatgtcccacat 432  Q
    ||||||| ||| ||||||||||| |||||||| |||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||    
T  38436270 tgttggagcaccagttaaatctagtgagaaaa-ttggataagaaaaacacaatgtaagaactagtgtgagcgtgtgacttaaaaatgtcccacat 38436363  T

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Target: chr3; HSP #5
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 367 - 432
Target Start/End: Complemental strand, 20811177 - 20811112
Alignment:
Q  367 aaaattggataagaaaaacacaatataagaactagtgtgagtgtgtgacttaaaaatgtcccacat 432  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  20811177 aaaattggataagaaaaacacaatgtaagaactagtgtgagtgtgtgacttaaaaatgtcccacat 20811112  T

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Target: chr1 (Bit Score: 84; Significance: 2e-39; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 54 - 297
Target Start/End: Original strand, 11979994 - 11980237
Alignment:
Q  54 tgaatttatggaaccagaaatttggggaacatttcctgaagatctatttgagtttgtgcttgcacgacttccaattgccataatttttcgcttacgcatt 153  Q
    |||| ||||| ||||| ||||||||| || ||||||||||||||||||||||  ||| |||||||||||||| |||| || |||| ||||||| |||  |    
T  11979994 tgaagttatgaaaccacaaatttgggaaaaatttcctgaagatctatttgagaatgttcttgcacgacttcccattgtcacaattattcgcttccgcgct 11980093  T
Q  154 gtatgtcgtcaatggaataatttgttaacctctcaaaggttttatcagcattttgatcaagtctcacaagaaaatccatggttttatacaacctttggag 253  Q
    |||||||  ||||||||||| ||| ||| ||| || || |||| ||||  || || |||||||||||| ||||||||||| ||||||||||| |||||||    
T  11980094 gtatgtcagcaatggaataacttgataagctcacagagtttttctcagttttgtgctcaagtctcacaggaaaatccatgcttttatacaacttttggag 11980193  T
Q  254 agaacaaatatggagctatctatgacccttttatgaaaagatgg 297  Q
    |  |  | |||| ||| || |||||||||| |||||||||||||    
T  11980194 attatgattatgaagccatgtatgacccttatatgaaaagatgg 11980237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 333 - 429
Target Start/End: Complemental strand, 38734924 - 38734829
Alignment:
Q  333 accagtgttggaacactagttaaatctaatgagaaaaattggataagaaaaacacaatataagaactagtgtgagtgtgtgacttaaaaatgtccca 429  Q
    |||| ||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38734924 accattgttggaacactagttaaatctagtgagaaaa-ttggataagaaaaacacaatataagaactagtgtgagtgtgtgacttaaaaatgtccca 38734829  T

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Target: chr1; HSP #3
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 337 - 432
Target Start/End: Original strand, 26650427 - 26650521
Alignment:
Q  337 gtgttggaacactagttaaatctaatgagaaaaattggataagaaaaacacaatataagaactagtgtgagtgtgtgacttaaaaatgtcccacat 432  Q
    |||||||||||||||||||||||| |||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  26650427 gtgttggaacactagttaaatctagtgagaaaa-ttggataagaaaaacacaatgtaagaactagtgtgagtgtgtgacttaaaaatgtcccacat 26650521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 338 - 432
Target Start/End: Complemental strand, 13891598 - 13891505
Alignment:
Q  338 tgttggaacactagttaaatctaatgagaaaaattggataagaaaaacacaatataagaactagtgtgagtgtgtgacttaaaaatgtcccacat 432  Q
    ||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  13891598 tgttggaacactagttaaatctagtgagaaaa-ttggataagaaaaacacaatataagaactagtgtaagtgtgtgacttaaaaatgtcccacat 13891505  T

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Target: chr1; HSP #5
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 338 - 432
Target Start/End: Complemental strand, 14582541 - 14582448
Alignment:
Q  338 tgttggaacactagttaaatctaatgagaaaaattggataagaaaaacacaatataagaactagtgtgagtgtgtgacttaaaaatgtcccacat 432  Q
    ||||||||||||||||||||||| |||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  14582541 tgttggaacactagttaaatctagtgagaaaa-ttggataagaaaaacacaatgtaagaactagtgtgagtgtgtgacttaaaaatgtcccacat 14582448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 34 - 238
Target Start/End: Original strand, 11953785 - 11953989
Alignment:
Q  34 tctagaatgtcatgtattgttgaatttatggaaccagaaatttggggaacatttcctgaagatctatttgagtttgtgcttgcacgacttccaattgcca 133  Q
    |||||| ||||||||||   |||| ||||| ||||||||||||||| ||  || |||||||||||||||||| ||||||||||||||||||| || ||||    
T  11953785 tctagagtgtcatgtatgactgaagttatgaaaccagaaatttgggaaaagttccctgaagatctatttgaggttgtgcttgcacgacttcccatggcca 11953884  T
Q  134 taatttttcgcttacgcattgtatgtcgtcaatggaataatttgttaacctctcaaaggttttatcagcattttgatcaagtctcacaagaaaatccatg 233  Q
     |||| |  | || || | |||||| |  ||||||||||||||| ||||||||||||| |||| |||||| | |  | |||||||||||| |||||||||    
T  11953885 aaattatatgtttccgtactgtatgccagcaatggaataatttgataacctctcaaagtttttctcagcaatgttctaaagtctcacaagtaaatccatg 11953984  T
Q  234 gtttt 238  Q
    |||||    
T  11953985 gtttt 11953989  T

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Target: chr1; HSP #7
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 338 - 432
Target Start/End: Original strand, 5602170 - 5602263
Alignment:
Q  338 tgttggaacactagttaaatctaatgagaaaaattggataagaaaaacacaatataagaactagtgtgagtgtgtgacttaaaaatgtcccacat 432  Q
    |||||||||||||||| ||| || |||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  5602170 tgttggaacactagttgaatttagtgagaaaa-ttggataagaaaaacacaatgtaagaactagtgtgagtgtgtgacttaaaaatgtcccacat 5602263  T

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Target: chr1; HSP #8
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 338 - 425
Target Start/End: Original strand, 39746674 - 39746760
Alignment:
Q  338 tgttggaacactagttaaatctaatgagaaaaattggataagaaaaacacaatataagaactagtgtgagtgtgtgacttaaaaatgt 425  Q
    |||||||||||||||| |||||| |||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  39746674 tgttggaacactagttgaatctagtgagaaaa-ttggataagaaaaacacaatgtaagaactagtgtgagtgtgtgacttaaaaatgt 39746760  T

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Target: chr1; HSP #9
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 338 - 432
Target Start/End: Complemental strand, 31289547 - 31289455
Alignment:
Q  338 tgttggaacactagttaaatctaatgagaaaaattggataagaaaaacacaatataagaactagtgtgagtgtgtgacttaaaaatgtcccacat 432  Q
    |||||||||||||||| |||||| |||||||| ||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||    
T  31289547 tgttggaacactagttgaatctagtgagaaaa-ttggataagaaaa-cacaatgtaagaactagtgtgagtgtgtgacttaaaaatgtcccacat 31289455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 338 - 432
Target Start/End: Complemental strand, 12179494 - 12179406
Alignment:
Q  338 tgttggaacactagttaaatctaatgagaaaaattggataagaaaaacacaatataagaactagtgtgagtgtgtgacttaaaaatgtcccacat 432  Q
    ||||||||| |||||||| |||| | | |||||||||||| |||||||||||| |||||||||||    ||||||||||||||||| ||| ||||    
T  12179494 tgttggaaccctagttaattctagtaa-aaaaattggata-gaaaaacacaatgtaagaactagt----gtgtgtgacttaaaaatatcctacat 12179406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 338 - 432
Target Start/End: Complemental strand, 10106835 - 10106741
Alignment:
Q  338 tgttggaacactagttaaatctaatgagaaaaattggataagaaaaac-acaatataagaactagtgtgagtgtgtgacttaaaaatgtcccacat 432  Q
    |||||||||||||||| |||||| |||||||| |||  | |||| ||  || | ||| |||||||||||  |||||||||||||||||||||||||    
T  10106835 tgttggaacactagttcaatctagtgagaaaa-ttgattgagaataattactacataggaactagtgtggttgtgtgacttaaaaatgtcccacat 10106741  T

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Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 582 - 663
Target Start/End: Original strand, 11954460 - 11954541
Alignment:
Q  582 gaagggattgtttcttgcaaaacgtcaactggggtttgggcacaccacttgatcccaacgccattgctatcatctgacttaa 663  Q
    |||||||||  ||||||  | |||||||||||||||||| |||| |||||||||| |  ||| ||||  |||||||||||||    
T  11954460 gaagggattagttcttgtgatacgtcaactggggtttggacacaacacttgatccaagtgccgttgcattcatctgacttaa 11954541  T

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Target: scaffold0132 (Bit Score: 80; Significance: 4e-37; HSPs: 2)
Name: scaffold0132
Description:

Target: scaffold0132; HSP #1
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 337 - 432
Target Start/End: Original strand, 2420 - 2514
Alignment:
Q  337 gtgttggaacactagttaaatctaatgagaaaaattggataagaaaaacacaatataagaactagtgtgagtgtgtgacttaaaaatgtcccacat 432  Q
    ||||||||||||||||| |||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2420 gtgttggaacactagttgaatctagtgagaaaa-ttggataagaaaaacacaatataagaactagtgtgagtgtgtgacttaaaaatgtcccacat 2514  T

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Target: scaffold0132; HSP #2
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 337 - 432
Target Start/End: Original strand, 10380 - 10474
Alignment:
Q  337 gtgttggaacactagttaaatctaatgagaaaaattggataagaaaaacacaatataagaactagtgtgagtgtgtgacttaaaaatgtcccacat 432  Q
    ||||||||||||||||| |||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10380 gtgttggaacactagttgaatctagtgagaaaa-ttggataagaaaaacacaatataagaactagtgtgagtgtgtgacttaaaaatgtcccacat 10474  T

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Target: chr7 (Bit Score: 76; Significance: 1e-34; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 338 - 429
Target Start/End: Original strand, 28291842 - 28291932
Alignment:
Q  338 tgttggaacactagttaaatctaatgagaaaaattggataagaaaaacacaatataagaactagtgtgagtgtgtgacttaaaaatgtccca 429  Q
    ||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  28291842 tgttggaacactagttaaatctaattagaaaa-ttggataagaaaaacacaatataagaactagtgtgagcgtgtgacttaaaaatgtccca 28291932  T

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Target: chr7; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 337 - 432
Target Start/End: Complemental strand, 24529184 - 24529090
Alignment:
Q  337 gtgttggaacactagttaaatctaatgagaaaaattggataagaaaaacacaatataagaactagtgtgagtgtgtgacttaaaaatgtcccacat 432  Q
    |||||||||||||||||||||||| |||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||| ||| ||||    
T  24529184 gtgttggaacactagttaaatctagtgagaaaa-ttggataagaaaaacataatataagaactagtgtgagtgtgtgacttaaaaatatcctacat 24529090  T

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Target: chr7; HSP #3
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 338 - 432
Target Start/End: Complemental strand, 9974062 - 9973969
Alignment:
Q  338 tgttggaacactagttaaatctaatgagaaaaattggataagaaaaacacaatataagaactagtgtgagtgtgtgacttaaaaatgtcccacat 432  Q
    |||||||||||||||| |||||| |||||||| |||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||    
T  9974062 tgttggaacactagttgaatctagtgagaaaa-ttggataagaaaaacacaatgtaagaactaatgtgagtgtgtgacttaaaaatgtcccacat 9973969  T

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Target: chr7; HSP #4
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 338 - 432
Target Start/End: Complemental strand, 33227113 - 33227019
Alignment:
Q  338 tgttggaacactagttaaatctaatgagaaaaattggataag-aaaaacacaatataagaactagtgtgagtgtgtgacttaaaaatgtcccacat 432  Q
    ||||||||||||||||||||||| |||||||| ||||||||| ||||||||||| |||||||||||||||||||||||||||||||||| ||||||    
T  33227113 tgttggaacactagttaaatctagtgagaaaa-ttggataaggaaaaacacaatgtaagaactagtgtgagtgtgtgacttaaaaatgttccacat 33227019  T

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Target: chr7; HSP #5
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 338 - 429
Target Start/End: Complemental strand, 7358127 - 7358037
Alignment:
Q  338 tgttggaacactagttaaatctaatgagaaaaattggataagaaaaacacaatataagaactagtgtgagtgtgtgacttaaaaatgtccca 429  Q
    |||||||||||||||| |||||  |||||||| ||||||||||||||||||||  ||||||||||||||| |||||||||||||||||||||    
T  7358127 tgttggaacactagttgaatcttttgagaaaa-ttggataagaaaaacacaatgcaagaactagtgtgagcgtgtgacttaaaaatgtccca 7358037  T

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Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 338 - 397
Target Start/End: Complemental strand, 10437456 - 10437398
Alignment:
Q  338 tgttggaacactagttaaatctaatgagaaaaattggataagaaaaacacaatataagaa 397  Q
    |||||||||||||||| |||||| |||||||| |||||||||||||||||||| ||||||    
T  10437456 tgttggaacactagttgaatctagtgagaaaa-ttggataagaaaaacacaatgtaagaa 10437398  T

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Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 338 - 397
Target Start/End: Complemental strand, 10451166 - 10451108
Alignment:
Q  338 tgttggaacactagttaaatctaatgagaaaaattggataagaaaaacacaatataagaa 397  Q
    |||||||||||||||| |||||| |||||||| |||||||||||||||||||| ||||||    
T  10451166 tgttggaacactagttgaatctagtgagaaaa-ttggataagaaaaacacaatgtaagaa 10451108  T

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Target: chr6 (Bit Score: 75; Significance: 4e-34; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 338 - 432
Target Start/End: Complemental strand, 19478931 - 19478838
Alignment:
Q  338 tgttggaacactagttaaatctaatgagaaaaattggataagaaaaacacaatataagaactagtgtgagtgtgtgacttaaaaatgtcccacat 432  Q
    |||||||||||||||| |||||| |||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  19478931 tgttggaacactagttgaatctagtgagaaaa-ttggataagaaaaacacaatgtaagaactagtgtgagtgtgtgacttaaaaatgtcccacat 19478838  T

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Target: chr6; HSP #2
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 369 - 432
Target Start/End: Original strand, 14450626 - 14450689
Alignment:
Q  369 aattggataagaaaaacacaatataagaactagtgtgagtgtgtgacttaaaaatgtcccacat 432  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  14450626 aattggataagaaaaacacaatgtaagaactagtgtgagtgtgtgacttaaaaatgtcccacat 14450689  T

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Target: chr6; HSP #3
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 338 - 432
Target Start/End: Complemental strand, 10485890 - 10485799
Alignment:
Q  338 tgttggaacactagttaaatctaatgagaaaaattggataagaaaaacacaatataagaactagtgtgagtgtgtgacttaaaaatgtcccacat 432  Q
    |||||||| |||||||||||||| ||||||||||||||| ||||||||||||| |||||||||||||  ||||| ||||||||||||| ||||||    
T  10485890 tgttggaatactagttaaatctagtgagaaaaattggat-agaaaaacacaatgtaagaactagtgt--gtgtgagacttaaaaatgttccacat 10485799  T

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Target: chr6; HSP #4
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 338 - 432
Target Start/End: Original strand, 17289607 - 17289697
Alignment:
Q  338 tgttggaacactagttaaatctaatgagaaaaattggataagaaaaacacaatataagaactagtgtgagtgtgtgacttaaaaatgtcccacat 432  Q
    |||||||||||||||| |||||| |||||||| ||||||| |||||||||||| |||||||||||||  ||||||||||||||||||||||||||    
T  17289607 tgttggaacactagttgaatctagtgagaaaa-ttggata-gaaaaacacaatgtaagaactagtgt--gtgtgtgacttaaaaatgtcccacat 17289697  T

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Target: chr2 (Bit Score: 75; Significance: 4e-34; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 338 - 432
Target Start/End: Complemental strand, 42915356 - 42915263
Alignment:
Q  338 tgttggaacactagttaaatctaatgagaaaaattggataagaaaaacacaatataagaactagtgtgagtgtgtgacttaaaaatgtcccacat 432  Q
    |||||||||||||||| |||||| |||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  42915356 tgttggaacactagttgaatctagtgagaaaa-ttggataagaaaaacacaatgtaagaactagtgtgagtgtgtgacttaaaaatgtcccacat 42915263  T

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Target: chr2; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 338 - 432
Target Start/End: Complemental strand, 5089872 - 5089778
Alignment:
Q  338 tgttggaacactagttaaatctaatgagaaaaattggataagaaaaacacaatataagaactagtgtgagtgtgtgactt-aaaaatgtcccacat 432  Q
    ||||| |||||||||| ||| || |||||||| |||||||||||||||||||| |||||||||||||||||| | ||||| |||||||||||||||    
T  5089872 tgttgaaacactagttgaatttagtgagaaaa-ttggataagaaaaacacaatgtaagaactagtgtgagtgcgggacttaaaaaatgtcccacat 5089778  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 338 - 431
Target Start/End: Complemental strand, 39959952 - 39959865
Alignment:
Q  338 tgttggaacactagttaaatctaatgagaaaaattggataagaaaaacacaatataagaactagtgtgagtgtgtgactt-aaaaatgtcccaca 431  Q
    |||||||||| |||||||||||| |||  ||| ||||||| |||||| ||||||||||||||| |    ||||||||||| ||||||||||||||    
T  39959952 tgttggaacagtagttaaatctagtga--aaagttggata-gaaaaatacaatataagaactatt----gtgtgtgacttaaaaaatgtcccaca 39959865  T

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Target: chr4 (Bit Score: 71; Significance: 1e-31; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 338 - 432
Target Start/End: Original strand, 10119806 - 10119899
Alignment:
Q  338 tgttggaacactagttaaatctaatgagaaaaattggataagaaaaacacaatataagaactagtgtgagtgtgtgacttaaaaatgtcccacat 432  Q
    |||||||||||||||| |||||  |||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  10119806 tgttggaacactagttgaatctcgtgagaaaa-ttggataagaaaaacacaatgtaagaactagtgtgagtgtgtgacttaaaaatgtcccacat 10119899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 338 - 429
Target Start/End: Complemental strand, 24490882 - 24490797
Alignment:
Q  338 tgttggaacactagttaaatctaatgagaaaaattggataagaaaaacacaatataagaactagtgtgagtgtgtgacttaaaaatgtccca 429  Q
    ||||||||||||||||||||||| |||| |||||||||| ||||||||||||| |||||||||||    |||||| ||||||||||||||||    
T  24490882 tgttggaacactagttaaatctagtgag-aaaattggat-agaaaaacacaatgtaagaactagt----gtgtgtaacttaaaaatgtccca 24490797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 338 - 432
Target Start/End: Complemental strand, 653782 - 653688
Alignment:
Q  338 tgttggaacactagttaaatctaatgagaaaaattggataagaaaaa-cacaatataagaactagtgtgagtgtgtgacttaaaaatgtcccacat 432  Q
    |||||||||||||||| |||||| |||||||| |||||| |||| || ||| | |||||||||||||||  | |||||||||||||||||||||||    
T  653782 tgttggaacactagtttaatctagtgagaaaa-ttggatgagaataatcactacataagaactagtgtggttatgtgacttaaaaatgtcccacat 653688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 336 - 405
Target Start/End: Original strand, 8082771 - 8082837
Alignment:
Q  336 agtgttggaacactagttaaatctaatgagaaaaattggataagaaaaacacaatataagaactagtgtg 405  Q
    |||||||||||||||||||| ||||  | ||||| |||||| |||||||||| || ||||||||||||||    
T  8082771 agtgttggaacactagttaattcta--gtgaaaagttggat-agaaaaacactatgtaagaactagtgtg 8082837  T

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Target: scaffold0011 (Bit Score: 60; Significance: 4e-25; HSPs: 2)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 338 - 432
Target Start/End: Complemental strand, 2420 - 2326
Alignment:
Q  338 tgttggaacactagttaaatctaatgagaaaaattggataagaaaaacacaatataagaactagtgtgagtgtgtgactta-aaaatgtcccacat 432  Q
    |||||||||||||||| || ||| |||||||| ||||||||||||||||||||  |||||||||||||||||||||||||| ||||||||||||||    
T  2420 tgttggaacactagttgaacctagtgagaaaa-ttggataagaaaaacacaatgaaagaactagtgtgagtgtgtgacttaaaaaatgtcccacat 2326  T

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Target: scaffold0011; HSP #2
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 338 - 432
Target Start/End: Complemental strand, 7674 - 7580
Alignment:
Q  338 tgttggaacactagttaaatctaatgagaaaaattggataagaaaaacacaatataagaactagtgtgagtgtgtgactta-aaaatgtcccacat 432  Q
    |||||||||||||||| || ||| |||||||| ||||||||||||||||||||  |||||||||||||||||||||||||| ||||||||||||||    
T  7674 tgttggaacactagttgaacctagtgagaaaa-ttggataagaaaaacacaatgaaagaactagtgtgagtgtgtgacttaaaaaatgtcccacat 7580  T

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Target: chr5 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 338 - 432
Target Start/End: Original strand, 13581981 - 13582075
Alignment:
Q  338 tgttggaacactagttaaatctaatgagaaaaattggataagaaaaa-cacaatataagaactagtgtgagtgtgtgacttaaaaatgtcccacat 432  Q
    |||||||||||||||| |||||| |||||||| |||||| |||| || ||| | |||||||||||||||  | |||||||||||||||||||||||    
T  13581981 tgttggaacactagttcaatctagtgagaaaa-ttggatgagaataatcactacataagaactagtgtggttatgtgacttaaaaatgtcccacat 13582075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 392 - 432
Target Start/End: Complemental strand, 14374864 - 14374824
Alignment:
Q  392 taagaactagtgtgagtgtgtgacttaaaaatgtcccacat 432  Q
    ||||||||||||||  |||||||||||||||||||||||||    
T  14374864 taagaactagtgtggttgtgtgacttaaaaatgtcccacat 14374824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 395 - 432
Target Start/End: Complemental strand, 7805810 - 7805773
Alignment:
Q  395 gaactagtgtgagtgtgtgacttaaaaatgtcccacat 432  Q
    |||||||||||  |||||||||||||||||||||||||    
T  7805810 gaactagtgtggttgtgtgacttaaaaatgtcccacat 7805773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0067 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 1)
Name: scaffold0067
Description:

Target: scaffold0067; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 338 - 432
Target Start/End: Original strand, 33305 - 33392
Alignment:
Q  338 tgttggaacactagttaaatctaatgagaaaaattggataagaaaaacacaatataagaactagtgtgagtgtgtgacttaaaaatgtcccacat 432  Q
    |||||||| ||||||||| |||| |||  ||||||||||| |||||||||||| ||||||||||||||    |||||||||||||||||||||||    
T  33305 tgttggaatactagttaattctagtga--aaaattggata-gaaaaacacaatgtaagaactagtgtg----tgtgacttaaaaatgtcccacat 33392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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