View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13273_low_10 (Length: 474)
Name: NF13273_low_10
Description: NF13273
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13273_low_10 |
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Alignment Details
Target: chr8 (Bit Score: 269; Significance: 1e-150; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 1 - 312
Target Start/End: Original strand, 33225878 - 33226189
Alignment:
| Q |
1 |
gaaagaacaaggttgaaaacaacatccatatgctg-actgaatccatccctttctttaaatggaatttgattttttgtcaaccccc-acaaaagaatgat |
98 |
Q |
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| T |
33225878 |
gaaagaacaagtttgaaaacaacatccatatgctgcactgaatccatccctttctttaaatggaatttgattttttgtcaaccccccacaaaagaatgat |
33225977 |
T |
|
| Q |
99 |
gcaaaatgaagtacttattatgttaagctcattttgcagtttattggagcatctgtgaaaccatcaatgttgataatcacggaacttttggaagctagtt |
198 |
Q |
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| T |
33225978 |
gcaaaatgaagtacttat---gttaagctcattttgcagtttattggagcatctgtgaaaccatcaatgttgataatcacggaacttttggaagctagtt |
33226074 |
T |
|
| Q |
199 |
cactttagaaacac-tagagagtatttatctaagttttacttttgatatttcttaagcaatggaatatttacatgcaaatgacataattcaccgtgatct |
297 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33226075 |
cactttagaaacacttagagagtatttatctaagttttacttttgatatttcttaagcaatggaatatttacatgcaaatgacataattcaccgtgatct |
33226174 |
T |
|
| Q |
298 |
aatgccatgcaatga |
312 |
Q |
| |
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|| |||||||||||| |
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| T |
33226175 |
aaagccatgcaatga |
33226189 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 382 - 459
Target Start/End: Original strand, 33226259 - 33226336
Alignment:
| Q |
382 |
gtctactaggagataaaatgttcattttgttaaaaataggggcgttctcaattcagtcaagtttttaagagtatatat |
459 |
Q |
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| T |
33226259 |
gtctactaggagataaaatgttcattttgttaaaaataggggcgttctcaattcagtcaagtttttaagggtatatat |
33226336 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 228 - 299
Target Start/End: Complemental strand, 33227183 - 33227112
Alignment:
| Q |
228 |
taagttttacttttgatatttcttaagcaatggaatatttacatgcaaatgacataattcaccgtgatctaa |
299 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||| |
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| T |
33227183 |
taagttttacttttgatatttcttaagcaatggaatatttacatgcaaatgacatcattcatcgtgatctaa |
33227112 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 382 - 459
Target Start/End: Complemental strand, 33227027 - 33226949
Alignment:
| Q |
382 |
gtctactaggagataaaatgttcattttgttaaaaataggggc-gttctcaattcagtcaagtttttaagagtatatat |
459 |
Q |
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|||||||||||||||||||||||||||||||||||||| || | |||| ||||| |||||||||||||| ||| ||||| |
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| T |
33227027 |
gtctactaggagataaaatgttcattttgttaaaaatacggacggttcccaatttagtcaagtttttaaaagtttatat |
33226949 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 53; Significance: 3e-21; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 228 - 304
Target Start/End: Original strand, 10528090 - 10528166
Alignment:
| Q |
228 |
taagttttacttttgatatttcttaagcaatggaatatttacatgcaaatgacataattcaccgtgatctaatgcca |
304 |
Q |
| |
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|||||||| |||||||||||||| |||| ||||| |||||||||||||||||||| |||||||||||||||| |||| |
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| T |
10528090 |
taagttttgcttttgatatttctcaagctatggagtatttacatgcaaatgacatcattcaccgtgatctaaagcca |
10528166 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 382 - 459
Target Start/End: Original strand, 10528251 - 10528329
Alignment:
| Q |
382 |
gtctactaggagataaaatgttcattttgttaaaaataggggc-gttctcaattcagtcaagtttttaagagtatatat |
459 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| || | |||| ||||| |||||||||||||| ||| ||||| |
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| T |
10528251 |
gtctactaggagataaaatgttcattttgttaaaaatacggacggttcccaatttagtcaagtttttaaaagtctatat |
10528329 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 240 - 297
Target Start/End: Original strand, 7469710 - 7469767
Alignment:
| Q |
240 |
ttgatatttcttaagcaatggaatatttacatgcaaatgacataattcaccgtgatct |
297 |
Q |
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|||||||||| |||||||||||||| | |||||||||| ||||||||||||||||| |
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| T |
7469710 |
ttgatatttcacaagcaatggaatatctgcatgcaaatggaataattcaccgtgatct |
7469767 |
T |
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