View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13273_low_11 (Length: 461)
Name: NF13273_low_11
Description: NF13273
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13273_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 383; Significance: 0; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 1 - 447
Target Start/End: Complemental strand, 2748291 - 2747845
Alignment:
| Q |
1 |
tgaattaatctaaacatgttggtactttgtgtcggaggaaacatgttacatattttattcttcctctcaactctttacatgatgatcgaaattggtagtg |
100 |
Q |
| |
|
|||||||||||||||||||||||||| ||| || ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
2748291 |
tgaattaatctaaacatgttggtactccttgtgcaagtaaacatgttacatattttattcttcctttcaactctttacatgatgatcgaaattggtagtg |
2748192 |
T |
|
| Q |
101 |
cttctatgtacacaattacatcttctcaattgatcaaagattctgaaactataagctcaaatgatgatgcattcaagcttggattcttcagccccatgaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2748191 |
cttctatgtacacaattacatcttctcaattgatcaaagattctgaaactataagctcaaatgatgatgcattcaagcttggattcttcagccccatgaa |
2748092 |
T |
|
| Q |
201 |
cacaacaaatcgctacgtaggaatctggtatctcaatcaatccaacataatatgggtagccaatagagaaaaccctctacaagattcttctggggttatc |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||| |
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| T |
2748091 |
cacaacaaatcgctacgtaggaatctggtatctcaatcaatccaacataatatgggtagccaatagagaaaaaccactacaagattcttctggggttatc |
2747992 |
T |
|
| Q |
301 |
accatatctgatgacaacacaaaccttgcagtattagatggacaaaaacatgttatatggtcctcaaatgtctccaactttgcatcaaattttaatgtca |
400 |
Q |
| |
|
||||| |||||||||||||||||||||| |||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2747991 |
accatgtctgatgacaacacaaaccttgtagtactgaatggacaaaaacatgttatatggtcctcaaatgtctccaactttgcatcaaattttaatgtca |
2747892 |
T |
|
| Q |
401 |
cagctcatcttcaaactactggaaacctcatcttgcaggaagacact |
447 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||| |
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|
| T |
2747891 |
cagctcatcttcaaactactggaaacctcgtcttgcaggaagacact |
2747845 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 39 - 447
Target Start/End: Complemental strand, 2721375 - 2720970
Alignment:
| Q |
39 |
aaacatgttacatattttattcttcctctcaactctttacatgatgatcgaaattggtagtgcttctatgtacacaattacatcttctcaattgatcaaa |
138 |
Q |
| |
|
|||||||||||||||||||||| || | || ||||||||||| | |||||||||||||||||||||||||||||||||||||| ||||||||||| |
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|
| T |
2721375 |
aaacatgttacatattttattcactcttttaatcctttacatgatca---aaattggtagtgcttctatgtacacaattacatcttctaaattgatcaaa |
2721279 |
T |
|
| Q |
139 |
gattctgaaactataagctcaaatgatgatgcattcaagcttggattcttcagccccatgaacacaacaaatcgctacgtaggaatctggtatctcaatc |
238 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2721278 |
gattctgaaactataagctcaaatgatgatgcattcaagcttggattcttcagcccaatgaacacaacaaatcgctacgtaggaatctggtatctcaatc |
2721179 |
T |
|
| Q |
239 |
aatccaacataatatgggtagccaatagagaaaaccctctacaagattcttctggggttatcaccatatctgatgacaacacaaaccttgcagtattaga |
338 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| |||||||||||||||||||||| |||| | | |
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|
| T |
2721178 |
aatccaacataatatgggtagccaatagagaaaaaccactacaagattcttctggggttatcaccatgtctgatgacaacacaaaccttgtagtactgaa |
2721079 |
T |
|
| Q |
339 |
tggacaaaaacatgttatatggtcctcaaatgtctccaactttgcatcaaattttaatgtcacagctcatcttcaaactactggaaacctcatcttgcag |
438 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| || |||||| ||||||||||||| |||||||| |
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|
| T |
2721078 |
tggacaaaaacatgttatatggtcctcaaatgtctccaattttgcatcaaattttaatgtcacagcttatattcaaaatactggaaacctcgtcttgcag |
2720979 |
T |
|
| Q |
439 |
gaagacact |
447 |
Q |
| |
|
||||||||| |
|
|
| T |
2720978 |
gaagacact |
2720970 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 1 - 447
Target Start/End: Complemental strand, 2726821 - 2726372
Alignment:
| Q |
1 |
tgaattaatctaaacatgttggtactttgtgtcggaggaaacatgttacatattttattcttcctctcaactctttacatgatgatcgaaattggtagtg |
100 |
Q |
| |
|
||||| |||||||||||||||| ||| ||| || |||||||||||||||||||||||| | ||||||||||||||||| | |||||||| ||| |
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|
| T |
2726821 |
tgaatgaatctaaacatgttgggactccttgtgcaagtaaacatgttacatattttattctttatttcaactctttacatgatca---aaattggttgtg |
2726725 |
T |
|
| Q |
101 |
cttctatgtacacaattacatcttctcaattgatcaaagattctgaaactataagctcaaatgatgatgcattcaagcttggattcttcagccccatgaa |
200 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||| |
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|
| T |
2726724 |
cttctatgtccacaattacatcttctcaattgatcaaatattctgaaactataagctcaagtgatgatgcattcaagcttggattcttcagcccagtgaa |
2726625 |
T |
|
| Q |
201 |
cacaacaaatcgctacgtaggaatctggtatctcaatcaatccaacataatatgggtagccaatagagaaaaccctctacaagattcttctggggttatc |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| |||||||| || |||||||||| ||||| |||||| |
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|
| T |
2726624 |
cacaacaaatcgctacgtaggaatctggtatctcaatcaatccaacatcatatgggttgccaacagagaaaaaccaatacaagattcatctggagttatc |
2726525 |
T |
|
| Q |
301 |
accatatctgatgacaacacaaaccttgcagtattagatggacaaaaacatgttatatggtcctcaaatgtctcca--actttg----catcaaatttta |
394 |
Q |
| |
|
|||||||||||||||||||||||||||| |||| | || |||| ||||||||||||||||| ||||||||||| | | |||| | ||||||| || |
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|
| T |
2726524 |
accatatctgatgacaacacaaaccttgtagtactgaatagacacaaacatgttatatggtcatcaaatgtctcaagtaatttggcatcctcaaattcta |
2726425 |
T |
|
| Q |
395 |
atgtcacagctcatcttcaaactactggaaacctcatcttgcaggaagacact |
447 |
Q |
| |
|
||||||| ||||| ||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
2726424 |
atgtcactgctcagcttcaaaatactggaaacctcatcttgcaggaagacact |
2726372 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 35 - 374
Target Start/End: Complemental strand, 2715208 - 2714872
Alignment:
| Q |
35 |
gaggaaacatgttacatattttattcttcctctcaactctttacatgatgatcgaaattggtagtgcttctatgtacacaattacatcttctcaattgat |
134 |
Q |
| |
|
|||||||||||||||||||||||||| || | || ||||||||||| | |||| ||||||||||||||||||||||||||||| ||||| ||||| |
|
|
| T |
2715208 |
gaggaaacatgttacatattttattcactcttttaatcctttacatgatca---aaatcggtagtgcttctatgtacacaattacatcctctcatttgat |
2715112 |
T |
|
| Q |
135 |
caaagattctgaaactataagctcaaatgatgatgcattcaagcttggattcttcagccccatgaacacaacaaatcgctacgtaggaatctggtatctc |
234 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
2715111 |
caaagattctgaaactataagctcaagtgatgatgcattcaagcttggattcttcagccccgtgaacacaacaaatcgctacgttggaatctggtatctc |
2715012 |
T |
|
| Q |
235 |
aatcaatccaacataatatgggtagccaatagagaaaaccctctacaagattcttctggggttatcaccatatctgatgacaacacaaaccttgcagtat |
334 |
Q |
| |
|
||||||||||||| |||||||||||||| ||||||| || ||||||||||||| || |||||||||||| ||||||||||||||||||||| ||||| |
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|
| T |
2715011 |
gatcaatccaacatcatatgggtagccaaccgagaaaaaccaatacaagattcttcaggagttatcaccatagctgatgacaacacaaaccttgtagtat |
2714912 |
T |
|
| Q |
335 |
tagatggacaaaaacatgttatatggtcctcaaatgtctc |
374 |
Q |
| |
|
|||||||||||||||||||| ||||||| ||||||||||| |
|
|
| T |
2714911 |
tagatggacaaaaacatgttgtatggtcatcaaatgtctc |
2714872 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 143; E-Value: 6e-75
Query Start/End: Original strand, 96 - 374
Target Start/End: Complemental strand, 2710118 - 2709840
Alignment:
| Q |
96 |
tagtgcttctatgtacacaattacatcttctcaattgatcaaagattctgaaactataagctcaaatgatgatgcattcaagcttggattcttcagcccc |
195 |
Q |
| |
|
|||||||||| || |||||||||||| |||||||||||||||| |||||| ||||| || || | || |||||||||||||||||||||||||| |
|
|
| T |
2710118 |
tagtgcttctgtgaacacaattacattgcctcaattgatcaaagaaaatgaaacaataagttctaacaacgaagcattcaagcttggattcttcagcccg |
2710019 |
T |
|
| Q |
196 |
atgaacacaacaaatcgctacgtaggaatctggtatctcaatcaatccaacataatatgggtagccaatagagaaaaccctctacaagattcttctgggg |
295 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||| ||||| |||||| |||||||||||||||| || ||||||||||||||||||| |
|
|
| T |
2710018 |
gtgaacacaacaaatcgctacgtaggaatctggtatatcaatcaatctaacatcatatggatagccaatagagaaaaaccactacaagattcttctgggg |
2709919 |
T |
|
| Q |
296 |
ttatcaccatatctgatgacaacacaaaccttgcagtattagatggacaaaaacatgttatatggtcctcaaatgtctc |
374 |
Q |
| |
|
||||||| |||||| |||| |||| ||||||| |||| | |||||||||| |||||||||||||| ||||||||||| |
|
|
| T |
2709918 |
ttatcacaatatctcatgattacaccaaccttgtagtactgaatggacaaaagcatgttatatggtcatcaaatgtctc |
2709840 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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