View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13273_low_14 (Length: 408)
Name: NF13273_low_14
Description: NF13273
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13273_low_14 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 362; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 19 - 396
Target Start/End: Original strand, 26312124 - 26312501
Alignment:
| Q |
19 |
cagaaattccagcatctgcttcattgtgtctttcagattcgggtcaaacgacccggaagatggaggatccgactgagtcaacacagccatagaatgaacg |
118 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26312124 |
cagaaactccagcatctgcttcattgtgtctttcagattcgggtcaaacgacccggaagatggaggatccgactgagtcaacacagccatagaatgaacg |
26312223 |
T |
|
| Q |
119 |
gtggaaactttgattttaccaccgagtgaagctgagttaagggcattttggacattttgtatcgcaggaagaaggtttgatatgagagcattatcgccgg |
218 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
26312224 |
gtggaaactttgattttgccaccgagtgaagctgagttaagggcattttggacattttgtatcgccggaagaaggtttgatatgagagcattatcgccgg |
26312323 |
T |
|
| Q |
219 |
aggtcataacttcgttaccgacggtgatgagagtgatgttgctagaagggtaatatggtaaaacatttgagttaacccattgagttgctgagttgggatt |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26312324 |
aggtcataacttcgttaccgacggtgatgagagtgatgttgctagaagggtaatatggtaaaacatttgagttaacccattgagttgctgagttgggatt |
26312423 |
T |
|
| Q |
319 |
tgaggccagaatcggaatgtcgccgttggcagctccgatggtgattccgatgcctgagtttgagagggatttgatgat |
396 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
26312424 |
tgaggccagaatcggaatgtcgccgttggcagctccgatggtgattccgatgccggagtttgagagggatttgatgat |
26312501 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 230 - 372
Target Start/End: Original strand, 54506638 - 54506780
Alignment:
| Q |
230 |
tcgttaccgacggtgatgagagtgatgttgctagaagggtaatatggtaaaacatttgagttaacccattgagttgctgagttgggatttgaggccagaa |
329 |
Q |
| |
|
||||||||||||||||||||||||||||| || | ||||||||| || || || |||| ||| | |||||||||||| | ||| |||| || || ||| |
|
|
| T |
54506638 |
tcgttaccgacggtgatgagagtgatgttactggcagggtaataaggcaacacgtttgtgtttatccattgagttgcggcgttaggatcagaagctagac |
54506737 |
T |
|
| Q |
330 |
tcggaatgtcgccgttggcagctccgatggtgattccgatgcc |
372 |
Q |
| |
|
| ||||||||| ||| || ||||||||| ||||||||||| |
|
|
| T |
54506738 |
ttggaatgtcgttgtttgcggctccgatgacaattccgatgcc |
54506780 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 58 - 122
Target Start/End: Original strand, 54506466 - 54506530
Alignment:
| Q |
58 |
cgggtcaaacgacccggaagatggaggatccgactgagtcaacacagccatagaatgaacggtgg |
122 |
Q |
| |
|
||||| |||||||||||| || || ||||||||||||| ||| || ||||| ||||| ||||||| |
|
|
| T |
54506466 |
cgggttaaacgacccggacgaaggtggatccgactgagccaaaaccgccatggaatgtacggtgg |
54506530 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University