View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13273_low_15 (Length: 387)

Name: NF13273_low_15
Description: NF13273
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13273_low_15
NF13273_low_15
[»] chr7 (5 HSPs)
chr7 (53-248)||(18103107-18103301)
chr7 (79-250)||(18066461-18066632)
chr7 (1-237)||(18129672-18129897)
chr7 (334-372)||(18066615-18066653)
chr7 (257-298)||(35290033-35290074)
[»] scaffold0027 (1 HSPs)
scaffold0027 (249-330)||(42722-42803)
[»] chr4 (3 HSPs)
chr4 (249-296)||(20960674-20960721)
chr4 (249-330)||(31041348-31041429)
chr4 (266-330)||(4702574-4702638)
[»] scaffold0896 (1 HSPs)
scaffold0896 (249-330)||(3138-3218)
[»] chr6 (3 HSPs)
chr6 (249-330)||(8810637-8810717)
chr6 (277-329)||(6365984-6366036)
chr6 (252-296)||(10278484-10278528)
[»] scaffold0334 (1 HSPs)
scaffold0334 (249-296)||(5213-5260)
[»] chr3 (2 HSPs)
chr3 (249-308)||(8174289-8174347)
chr3 (247-296)||(14030716-14030765)
[»] chr1 (5 HSPs)
chr1 (249-296)||(42440131-42440178)
chr1 (250-308)||(1579432-1579490)
chr1 (249-326)||(13234079-13234156)
chr1 (249-330)||(31979418-31979499)
chr1 (249-298)||(41950067-41950116)
[»] chr8 (2 HSPs)
chr8 (281-330)||(9639995-9640044)
chr8 (248-296)||(943128-943176)
[»] chr2 (1 HSPs)
chr2 (249-297)||(4138021-4138069)


Alignment Details
Target: chr7 (Bit Score: 128; Significance: 4e-66; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 53 - 248
Target Start/End: Original strand, 18103107 - 18103301
Alignment:
Q  53 caataattacttgtgaagtagataagtcacgttgagatgatttctgtgagggaagtagaagtattcctgcaatagtaacattataatacactttgcatta 152  Q
    |||||| ||| ||||||||||||||||||||||||||||||||||  ||||||||||||||||| ||||||||| |||||||| ||||||||||||||||    
T  18103107 caataactacctgtgaagtagataagtcacgttgagatgatttctccgagggaagtagaagtatgcctgcaatattaacattaaaatacactttgcatta 18103206  T
Q  153 ctctattcgtcgtaagttataactcacgttggaaaaaacaatttgtctcaaattagaaatcatttgactatattaatgaaacattattgtttcctc 248  Q
    ||| |||||||||||||||||| |||||||| |||||| |||||||||||| ||| ||||||||||| |||| ||||||||||||||| |||||||    
T  18103207 ctcgattcgtcgtaagttataagtcacgttgcaaaaaataatttgtctcaacttaaaaatcatttgagtata-taatgaaacattattttttcctc 18103301  T

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Target: chr7; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 79 - 250
Target Start/End: Original strand, 18066461 - 18066632
Alignment:
Q  79 tcacgttgagatgatttctgtgagggaagtagaagtattcctgcaatagtaacattataatacactttgcattactctattcgtcgtaagttataactca 178  Q
    ||||||||||||| |||||| ||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| |||    
T  18066461 tcacgttgagatggtttctgcgagggaagtagaagtatacctgcaatagtaacattaaaatacactttgcattactctatttgtcgtaagttataagtca 18066560  T
Q  179 cgttggaaaaaacaatttgtctcaaattagaaatcatttgactatattaatgaaacattattgtttcctctt 250  Q
    ||||| |||||| ||||||| | ||||||||||||||||||||||||| || ||||||||||||||||||||    
T  18066561 cgttgcaaaaaataatttgtttaaaattagaaatcatttgactatattcataaaacattattgtttcctctt 18066632  T

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Target: chr7; HSP #3
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 18129672 - 18129897
Alignment:
Q  1 agttactatgaatcagtatcattgtgcctatggctaaaaccatggatatggtcaataattacttgtgaagtagataagtcacgttgagatgatttctgtg 100  Q
    |||||||| || ||| ||||||||||||||||||||||||||||||||| | |||||| ||| | |||||||||||||||||||||||||  |||||  |    
T  18129672 agttactacgactcaatatcattgtgcctatggctaaaaccatggatatagccaataactacctttgaagtagataagtcacgttgagattgtttctccg 18129771  T
Q  101 agggaagtagaagtattcctgcaatagtaacattataatacactttgcattactctattcgtcgtaagttataactcacgttggaaaaaacaatttgtct 200  Q
    |||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||| |||||||||||||           |||||| ||||||| |    
T  18129772 agggaagtagaagtattcctgcaatattaacattataatacactttccattactctatttgtcgtaagttata-----------aaaaaataatttgttt 18129860  T
Q  201 caaattagaaatcatttgactatattaatgaaacatt 237  Q
     ||||||||||||||||||||||||| || |||||||    
T  18129861 aaaattagaaatcatttgactatattcataaaacatt 18129897  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 334 - 372
Target Start/End: Original strand, 18066615 - 18066653
Alignment:
Q  334 acattatggtttcctcttacaaaattaactatacttttt 372  Q
    ||||||| ||||||||||||||||||||||||| |||||    
T  18066615 acattattgtttcctcttacaaaattaactataattttt 18066653  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 257 - 298
Target Start/End: Complemental strand, 35290074 - 35290033
Alignment:
Q  257 tggtggttcgggtttgaatttcagaccttgcatatattatat 298  Q
    |||||||| ||||||||| |||||||||| ||||||||||||    
T  35290074 tggtggttggggtttgaacttcagaccttccatatattatat 35290033  T

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Target: scaffold0027 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 249 - 330
Target Start/End: Complemental strand, 42803 - 42722
Alignment:
Q  249 ttttttggtggtggttcgggtttgaatttcagaccttgcatatattatatgttgtttctaacaagtgggttaagctcacgag 330  Q
    |||||| |||||||| |||||||||| | |||||||| |||||||||||| ||||||||  ||| || |||||| |||||||    
T  42803 tttttttgtggtggtccgggtttgaactacagaccttacatatattatatattgtttcttccaactgagttaagttcacgag 42722  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 249 - 296
Target Start/End: Original strand, 20960674 - 20960721
Alignment:
Q  249 ttttttggtggtggttcgggtttgaatttcagaccttgcatatattat 296  Q
    |||||||||||||| | |||||||||||||||| ||||||||||||||    
T  20960674 ttttttggtggtggctggggtttgaatttcagatcttgcatatattat 20960721  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 249 - 330
Target Start/End: Original strand, 31041348 - 31041429
Alignment:
Q  249 ttttttggtggtggttcgggtttgaatttcagaccttgcatatattatatgttgtttctaacaagtgggttaagctcacgag 330  Q
    ||||||| |||||| | |||||| ||   ||||||||||||||||||||  ||||||||| ||| || ||||||||||||||    
T  31041348 ttttttgatggtggctagggtttaaaccccagaccttgcatatattatacattgtttctaccaaatgagttaagctcacgag 31041429  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 266 - 330
Target Start/End: Complemental strand, 4702638 - 4702574
Alignment:
Q  266 gggtttgaatttcagaccttgcatatattatatgttgtttctaacaagtgggttaagctcacgag 330  Q
    ||||||||||  |||||||||||||| |||||||||||| ||| |||  | | ||||||||||||    
T  4702638 gggtttgaatcacagaccttgcatattttatatgttgttcctatcaacagagctaagctcacgag 4702574  T

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Target: scaffold0896 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0896
Description:

Target: scaffold0896; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 249 - 330
Target Start/End: Complemental strand, 3218 - 3138
Alignment:
Q  249 ttttttggtggtggttcgggtttgaatttcagaccttgcatatattatatgttgtttctaacaagtgggttaagctcacgag 330  Q
    ||||||| |||||||||||||||||| | ||||||||||||||||||| | |||| | || ||| || | ||||||||||||    
T  3218 ttttttgttggtggttcgggtttgaact-cagaccttgcatatattatgtattgtctttaccaactgagctaagctcacgag 3138  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000006; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 249 - 330
Target Start/End: Complemental strand, 8810717 - 8810637
Alignment:
Q  249 ttttttggtggtggttcgggtttgaatttcagaccttgcatatattatatgttgtttctaacaagtgggttaagctcacgag 330  Q
    |||||| ||||||||||||||||||| | ||||||||||||||||||| | |||| | || ||| || | ||||||||||||    
T  8810717 tttttttgtggtggttcgggtttgaact-cagaccttgcatatattatgtattgtctttaccaactgagctaagctcacgag 8810637  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 277 - 329
Target Start/End: Complemental strand, 6366036 - 6365984
Alignment:
Q  277 tcagaccttgcatatattatatgttgtttctaacaagtgggttaagctcacga 329  Q
    |||||||||||||||||||||||||||   |||||| || | |||||||||||    
T  6366036 tcagaccttgcatatattatatgttgtccttaacaactgagctaagctcacga 6365984  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 252 - 296
Target Start/End: Complemental strand, 10278528 - 10278484
Alignment:
Q  252 tttggtggtggttcgggtttgaatttcagaccttgcatatattat 296  Q
    ||||||||||||| ||||| ||| |||||| ||||||||||||||    
T  10278528 tttggtggtggttggggttcgaacttcagatcttgcatatattat 10278484  T

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Target: scaffold0334 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0334
Description:

Target: scaffold0334; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 249 - 296
Target Start/End: Complemental strand, 5260 - 5213
Alignment:
Q  249 ttttttggtggtggttcgggtttgaatttcagaccttgcatatattat 296  Q
    |||||| ||||||||| |||||||||  ||||||||||||||||||||    
T  5260 tttttttgtggtggttggggtttgaacctcagaccttgcatatattat 5213  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 249 - 308
Target Start/End: Complemental strand, 8174347 - 8174289
Alignment:
Q  249 ttttttggtggtggttcgggtttgaatttcagaccttgcatatattatatgttgtttcta 308  Q
    |||||| ||||||||  ||||||||||| ||||||||||||||||||||| |||| ||||    
T  8174347 tttttttgtggtggtcggggtttgaatt-cagaccttgcatatattatatattgtctcta 8174289  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 247 - 296
Target Start/End: Original strand, 14030716 - 14030765
Alignment:
Q  247 tcttttttggtggtggttcgggtttgaatttcagaccttgcatatattat 296  Q
    |||||||||||||||||  ||||||||| | || ||||||||||||||||    
T  14030716 tcttttttggtggtggtcggggtttgaactccaaaccttgcatatattat 14030765  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000009; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 249 - 296
Target Start/End: Original strand, 42440131 - 42440178
Alignment:
Q  249 ttttttggtggtggttcgggtttgaatttcagaccttgcatatattat 296  Q
    |||||||||||||||| ||||||||| | |||||||| ||||||||||    
T  42440131 ttttttggtggtggttagggtttgaactccagaccttacatatattat 42440178  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 250 - 308
Target Start/End: Complemental strand, 1579490 - 1579432
Alignment:
Q  250 tttttggtggtggttcgggtttgaatttcagaccttgcatatattatatgttgtttcta 308  Q
    ||||||||||||||   ||||| ||||||||||||| |||||||||||| |||| ||||    
T  1579490 tttttggtggtggtcgaggtttaaatttcagaccttacatatattatatattgtctcta 1579432  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 249 - 326
Target Start/End: Complemental strand, 13234156 - 13234079
Alignment:
Q  249 ttttttggtggtggttcgggtttgaatttcagaccttgcatatattatatgttgtttctaacaagtgggttaagctca 326  Q
    |||||| ||||||||  |||||||| | ||||||||||||||||||||  |||||| ||| ||| || | ||||||||    
T  13234156 tttttttgtggtggtcggggtttgattctcagaccttgcatatattatgcgttgttcctaccaactgagctaagctca 13234079  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 249 - 330
Target Start/End: Original strand, 31979418 - 31979499
Alignment:
Q  249 ttttttggtggtggttcgggtttgaatttcagaccttgcatatattatatgttgtttctaacaagtgggttaagctcacgag 330  Q
    |||||| ||||||||| ||||||||| | || |||||||||||| ||||| |||| |||| ||| |  |||||| |||||||    
T  31979418 tttttttgtggtggttggggtttgaactccaaaccttgcatataatatatattgtctctaccaactaagttaagttcacgag 31979499  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 249 - 298
Target Start/End: Original strand, 41950067 - 41950116
Alignment:
Q  249 ttttttggtggtggttcgggtttgaatttcagaccttgcatatattatat 298  Q
    |||||||||||||||  ||||| |||  ||||||||||||||||||||||    
T  41950067 ttttttggtggtggtcggggttcgaacctcagaccttgcatatattatat 41950116  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 281 - 330
Target Start/End: Complemental strand, 9640044 - 9639995
Alignment:
Q  281 accttgcatatattatatgttgtttctaacaagtgggttaagctcacgag 330  Q
    ||||| ||||||||||  |||||||||||||| || ||||||||||||||    
T  9640044 accttacatatattattcgttgtttctaacaactgagttaagctcacgag 9639995  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 248 - 296
Target Start/End: Complemental strand, 943176 - 943128
Alignment:
Q  248 cttttttggtggtggttcgggtttgaatttcagaccttgcatatattat 296  Q
    ||||||||||||||||| ||||| ||||| | |||||||||||| ||||    
T  943176 cttttttggtggtggttggggttcgaattccggaccttgcatattttat 943128  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 249 - 297
Target Start/End: Complemental strand, 4138069 - 4138021
Alignment:
Q  249 ttttttggtggtggttcgggtttgaatttcagaccttgcatatattata 297  Q
    |||||| ||||||||  |||||||||| || ||||||||||||||||||    
T  4138069 tttttttgtggtggtcggggtttgaatctcggaccttgcatatattata 4138021  T

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