View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13273_low_16 (Length: 380)
Name: NF13273_low_16
Description: NF13273
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13273_low_16 |
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Alignment Details
Target: chr3 (Bit Score: 342; Significance: 0; HSPs: 9)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 16 - 373
Target Start/End: Complemental strand, 46998113 - 46997756
Alignment:
| Q |
16 |
atgtctttgttgtccattcaagttactgaattattggatagtgtttttataggttgttccatgaatcattgtattggtgatggaactggttattggaatt |
115 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46998113 |
atgtctttgttgtccattcaagttactgaattattggatagtgtttttataggttgttccatgaatcattgtattggtgatggaactggttattggaatt |
46998014 |
T |
|
| Q |
116 |
tctttaacttattttctgagatatttcaaaatgatgttcatgttcctgttccgatttcacataaacctactcacaataaatggtttccagaaggttatgg |
215 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||| |
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| T |
46998013 |
tctttaactcattttctgagatatttcaaaatgatgttcatgttcctgttccgatttcacataaacctattcacaatagatggtttccagaaggttatgg |
46997914 |
T |
|
| Q |
216 |
tccaatcatcaaccttcctttcaaacatcatgacgagtttattcatagatatgaaacacctattttgagagagagaatatttcatttttcagcagagtct |
315 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46997913 |
tccaatcatcagccttcctttcaaacatcatgacgagtttattcatagatatgaaacacctattttgagagagagaatatttcatttttcagcagagtct |
46997814 |
T |
|
| Q |
316 |
attgcgaaacttaaagcaaaagctaacaaagagtctgatacaaacaaaatctcttctt |
373 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
46997813 |
attgcgaaacttaaagcaaaagctaacaaagagtctgatacaaacaaaatctcttctt |
46997756 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 31 - 371
Target Start/End: Complemental strand, 46975035 - 46974695
Alignment:
| Q |
31 |
attcaagttactgaattattggatagtgtttttataggttgttccatgaatcattgtattggtgatggaactggttattggaatttctttaacttatttt |
130 |
Q |
| |
|
|||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||| ||||| |
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|
| T |
46975035 |
attcaagtaactgaattattggatggtgtttttataggttgttccatgaatcattgtataggtgatgggactggttattggaatttctttaactcatttt |
46974936 |
T |
|
| Q |
131 |
ctgagatatttcaaaatgatgttcatgttcctgttccgatttcacataaacctactcacaataaatggtttccagaaggttatggtccaatcatcaacct |
230 |
Q |
| |
|
|||||||||||||||||||| ||||||||| |||||||||||||||| |||||| ||||||| |||||||||| ||||||||||||| || |||||||| |
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|
| T |
46974935 |
ctgagatatttcaaaatgatattcatgttcttgttccgatttcacatcaacctatccacaatagatggtttccacaaggttatggtccgattatcaacct |
46974836 |
T |
|
| Q |
231 |
tcctttcaaacatcatgacgagtttattcatagatatgaaacacctattttgagagagagaatatttcatttttcagcagagtctattgcgaaacttaaa |
330 |
Q |
| |
|
||| ||||||||||| || |||||| |||| |||||||||||| | ||||| ||||||||||| || ||||||||||| |||||||| |||||| ||| |
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|
| T |
46974835 |
tccattcaaacatcacgaggagtttgttcacagatatgaaacatccattttaagagagagaatcttccatttttcagctgagtctataatgaaactgaaa |
46974736 |
T |
|
| Q |
331 |
gcaaaagctaacaaagagtctgatacaaacaaaatctcttc |
371 |
Q |
| |
|
||||| || || |||||||| |||||| ||||| ||||| |
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|
| T |
46974735 |
gcaaaggcaaatgaagagtctaatacaagaaaaatttcttc |
46974695 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 16 - 371
Target Start/End: Complemental strand, 46995865 - 46995498
Alignment:
| Q |
16 |
atgtctttgttgtccattcaagttactgaattattggatagtgtttttataggttgttccatgaatcattgtattggtgatggaactggttattggaatt |
115 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||| || ||||||| ||||||||||||||||| || | ||||||||||||||| ||||||||||| |
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|
| T |
46995865 |
atgtctttgttgtccattcaagtcactgaattattagacggtgttttcataggttgttccatgaaccacgctgttggtgatggaactgcttattggaatt |
46995766 |
T |
|
| Q |
116 |
tctttaacttattttctgagatatttcaaaa------------tgatgttcatgttcctgttccgatttcacataaacctactcacaataaatggtttcc |
203 |
Q |
| |
|
||||||| | ||||||||||||||||||| |||||||||| |||||||||| |||||||| |||||| |||||||| ||||||||| |
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|
| T |
46995765 |
tctttaatacactttctgagatatttcaaaaggttgttgatgttgatgttcatattcctgttcctatttcacaccaacctattcacaatagatggtttcc |
46995666 |
T |
|
| Q |
204 |
agaaggttatggtccaatcatcaaccttcctttcaaacatcatgacgagtttattcatagatatgaaacacctattttgagagagagaatatttcatttt |
303 |
Q |
| |
|
||||| ||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||| || |||||| |
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|
| T |
46995665 |
tgaaggctatggtccaattatcaaccttcctttcaaacatcacgacgagtttattcatagatatgaagcacctattttgagagagagaatcttccatttt |
46995566 |
T |
|
| Q |
304 |
tcagcagagtctattgcgaaacttaaagcaaaagctaacaaagagtctgatacaaacaaaatctcttc |
371 |
Q |
| |
|
|||||||||| ||| || ||||| |||||||| || |||||||||| || |||| ||||||||||| |
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|
| T |
46995565 |
tcagcagagtttatagcaaaactcaaagcaaaggcaaacaaagagtgcgagacaacgaaaatctcttc |
46995498 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 16 - 371
Target Start/End: Complemental strand, 46981037 - 46980684
Alignment:
| Q |
16 |
atgtctttgttgtccattcaagttactgaattattggatagtgtttttataggttgttccatgaatcattgtattggtgatggaactggttattggaatt |
115 |
Q |
| |
|
|||||||||||||| |||||||| ||||||||| | ||| ||||||| || ||||||||||||||||||||| || |||||||||| | ||||||||||| |
|
|
| T |
46981037 |
atgtctttgttgtctattcaagtcactgaattagtagatggtgttttcattggttgttccatgaatcattgtctttgtgatggaacagcttattggaatt |
46980938 |
T |
|
| Q |
116 |
tctttaacttattttctgagatatttcaaaatgatgttcatgttcctgttccgatttcacataaacctactcacaataaatggtttccagaaggttatgg |
215 |
Q |
| |
|
|||| ||| ||||||||||||||||||||||||||||| || | || ||| ||||||||| |||||| ||||| | |||||||||| |||||||||| |
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|
| T |
46980937 |
tcttcaacacattttctgagatatttcaaaatgatgttcctgctgct--tcccatttcacatcaacctatccacaagagatggtttccacaaggttatgg |
46980840 |
T |
|
| Q |
216 |
tccaatcatcaaccttcctttcaaacatcatgacgagtttattcatagatatgaaacacctattttgagagagagaatatttcatttttcagcagagtct |
315 |
Q |
| |
|
|||||| ||||||||||| ||||||||||| | |||||| |||| |||||||||||||| ||||| ||||||||||| || |||||||||| || ||| |
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|
| T |
46980839 |
tccaattatcaaccttccattcaaacatcaccatgagtttgttcacagatatgaaacacccattttaagagagagaatcttccatttttcagtggaatct |
46980740 |
T |
|
| Q |
316 |
attgcgaaacttaaagcaaaagctaacaaagagtctgatacaaacaaaatctcttc |
371 |
Q |
| |
|
|| || |||||||||||||| || || ||||||| ||||||||||||| ||||| |
|
|
| T |
46980739 |
atagcaaaacttaaagcaaaggcaaatgcagagtctaatacaaacaaaatttcttc |
46980684 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 151; E-Value: 8e-80
Query Start/End: Original strand, 16 - 218
Target Start/End: Complemental strand, 47001805 - 47001603
Alignment:
| Q |
16 |
atgtctttgttgtccattcaagttactgaattattggatagtgtttttataggttgttccatgaatcattgtattggtgatggaactggttattggaatt |
115 |
Q |
| |
|
|||||||||||||| |||||||| ||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||| | ||||||||||| |
|
|
| T |
47001805 |
atgtctttgttgtctattcaagtcactgaattattggatggtgttttcataggttgttccatgaatcattgtattggtgatggaacagcttattggaatt |
47001706 |
T |
|
| Q |
116 |
tctttaacttattttctgagatatttcaaaatgatgttcatgttcctgttccgatttcacataaacctactcacaataaatggtttccagaaggttatgg |
215 |
Q |
| |
|
|||| ||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| | ||||||||||||||||||||| |
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|
| T |
47001705 |
tcttcaacacattttcggagatatttcaaaatgatgttcatgttcctgttccgatttcacataaacctattcacaaaagatggtttccagaaggttatgg |
47001606 |
T |
|
| Q |
216 |
tcc |
218 |
Q |
| |
|
||| |
|
|
| T |
47001605 |
tcc |
47001603 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 204 - 371
Target Start/End: Complemental strand, 47001589 - 47001421
Alignment:
| Q |
204 |
agaaggttatggtccaatcatcaaccttcctttcaaacatcatgacgagtttattcatagatatgaaacacctattttgagagagagaatatttcatttt |
303 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| |||||| || |||||| |||||||||||| ||||| |||||| |
|
|
| T |
47001589 |
agaaggttatggtccaactatcaaccttcctttcaaacatcacgacgagtttattcacagatatcaagcacctactttgagagagaggatattccatttt |
47001490 |
T |
|
| Q |
304 |
tcagcagagtctattgcgaaacttaaa-gcaaaagctaacaaagagtctgatacaaacaaaatctcttc |
371 |
Q |
| |
|
|||||||||||||| |||||||||||| ||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
47001489 |
tcagcagagtctatagcgaaacttaaaggcaaaagctaacaaagagtttgatacaaacaaaatctcttc |
47001421 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 22 - 371
Target Start/End: Complemental strand, 46951602 - 46951256
Alignment:
| Q |
22 |
ttgttgtccattcaagttactgaattattggatagtgtttttataggttgttccatgaatcattgtattggtgatggaactggttattggaatttcttta |
121 |
Q |
| |
|
||||| ||||| ||||| ||||| || | ||| ||||||| ||||||||||| |||||||| | |||||||||||||||| ||||||||||||||||| |
|
|
| T |
46951602 |
ttgttatccatccaagtcactgagctagtagatggtgttttcataggttgttctatgaatcactatattggtgatggaacttcttattggaatttcttta |
46951503 |
T |
|
| Q |
122 |
acttattttctgagatatttcaaaatgatgttcatgttcctgttccgatttcacataaacctactcacaataaatggtttccagaaggttatggtccaat |
221 |
Q |
| |
|
| || ||||| ||||||||| | | |||| ||||| ||||||| |||| | |||| | |||||||||||||||||||||||| | |
|
|
| T |
46951502 |
atacatggtctgaaatatttcaaggccaaggccatg---atgttcgcatttcacgccaaccctcacacattcgttggtttccagaaggttatggtccact |
46951406 |
T |
|
| Q |
222 |
catcaaccttcctttcaaacatcatgacgagtttattcatagatatgaaacacctattttgagagagagaatatttcatttttcagcagagtctattgcg |
321 |
Q |
| |
|
||||| ||||| |||||||||||||||||| |||| ||| |||||| |||| | ||||||||||| | || |||||| |||||||||||||||| |
|
|
| T |
46951405 |
gatcaatcttccattcaaacatcatgacgagattataactaggtatgaaccacccaagctgagagagagattcttccattttacagcagagtctattgca |
46951306 |
T |
|
| Q |
322 |
aaacttaaagcaaaagctaacaaagagtctgatacaaacaaaatctcttc |
371 |
Q |
| |
|
|| | ||||| || || || | |||||| ||||||||||||||||||| |
|
|
| T |
46951305 |
aagttgaaagctaaggccaatatggagtctaatacaaacaaaatctcttc |
46951256 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 28 - 119
Target Start/End: Complemental strand, 46955933 - 46955842
Alignment:
| Q |
28 |
tccattcaagttactgaattattggatagtgtttttataggttgttccatgaatcattgtattggtgatggaactggttattggaatttctt |
119 |
Q |
| |
|
||||||||||| || |||||| |||| ||||||| ||||||||||||||||| ||||||||||||||||| ||| || |||||||||||| |
|
|
| T |
46955933 |
tccattcaagtcacggaattaggggatggtgttttcataggttgttccatgaaccattgtattggtgatgggacttctttttggaatttctt |
46955842 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 50 - 144
Target Start/End: Complemental strand, 46958767 - 46958673
Alignment:
| Q |
50 |
tggatagtgtttttataggttgttccatgaatcattgtattggtgatggaactggttattggaatttctttaacttattttctgagatatttcaa |
144 |
Q |
| |
|
||||| ||||||| |||||||||||| |||||||||||||||||||||| || || |||||||| ||||| ||| ||||||||||||||| |
|
|
| T |
46958767 |
tggatggtgttttcataggttgttccctgaatcattgtattggtgatggtacctctttctggaatttttttaatatatggtctgagatatttcaa |
46958673 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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