View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13273_low_2 (Length: 596)
Name: NF13273_low_2
Description: NF13273
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13273_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 193; Significance: 1e-104; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 193; E-Value: 1e-104
Query Start/End: Original strand, 21 - 232
Target Start/End: Complemental strand, 24914921 - 24914712
Alignment:
| Q |
21 |
agatggcatgaggaagaaggatgatcacaatttgacaaataaaagtaaaagccaaaaggtactacttttgttcttttgatattcatattaccatacaact |
120 |
Q |
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| T |
24914921 |
agatggcacgaggaagaaggatgatcacaatttgacaaataaaagtaaaagccaaaaggtactacttttgttcttttgatattcatattaccatacaact |
24914822 |
T |
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| Q |
121 |
cttcagaatgataatacttactctatatactgataataagtctgaaacaaaattgtgacttatgcttgaatatgcaaatattatatcacatatagtgtat |
220 |
Q |
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| T |
24914821 |
cttcagaatgatattacttactctatatactgataataagtctgaaacaaaattgtgacttatgcttgaatatgcaaatattatatcac--atagtgtat |
24914724 |
T |
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| Q |
221 |
ttatcgaatgtt |
232 |
Q |
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|||||||||||| |
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| T |
24914723 |
ttatcgaatgtt |
24914712 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 380 - 558
Target Start/End: Complemental strand, 24914717 - 24914539
Alignment:
| Q |
380 |
aatgttctttgtttatatttatatacttattcagtagtgggcttagatgttttggaannnnnnncaggaaaaaattgttgatcttgcaatcaagtcgtct |
479 |
Q |
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| T |
24914717 |
aatgttttttgtttatatttatatacttgttcagtagtgggcttagatgttttggattttttttcaggaaaaaattgttgatcttgcaatcaagtcgtct |
24914618 |
T |
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| Q |
480 |
aactctgctacgcaagtaaacattctcccagaaagagttgtttatcatgcaaacaagtcatcagattctgctgcgcaag |
558 |
Q |
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| T |
24914617 |
aactctgctgcgcaagtaaacattctcccagaaagagttgttgatcatacaaaccagtcgtcagacacttctgcgcaag |
24914539 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 498 - 582
Target Start/End: Complemental strand, 24914530 - 24914446
Alignment:
| Q |
498 |
aacattctcccagaaagagttgtttatcatgcaaacaagtcatcagattctgctgcgcaagaagagttaaggatggacaatgatg |
582 |
Q |
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| T |
24914530 |
aacattctcccagaaagagttgtttatcatgcaaacaagtcatcagattctgctgcgcaagaagagttaaggatggacaatgatg |
24914446 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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