View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13273_low_21 (Length: 339)
Name: NF13273_low_21
Description: NF13273
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13273_low_21 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 224; Significance: 1e-123; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 46 - 339
Target Start/End: Original strand, 47477495 - 47477793
Alignment:
| Q |
46 |
gctcaaattggcataa----caattgcggtattaaatttagaacataaaagaaattcttggcannnnnnn-aatgataaatgttactaattagttagttg |
140 |
Q |
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| T |
47477495 |
gctcaaattggcataagtttcaattgcggtattaaatttagaacataaaagaaattcttggcattttttttaatgataaatgttactagttagttagttg |
47477594 |
T |
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| Q |
141 |
tgagattactatttactcgtctgtccggatttaaacccaggacctcttggcaaagtaccaattcttgtagttattattaatatgtatatacctttccaac |
240 |
Q |
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| T |
47477595 |
tgagattactatttactcgtctgtccagatttaaacccaggacctcttggcaaagtaccaattcttgtagttattattaatatgtatatacctttccaac |
47477694 |
T |
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| Q |
241 |
caaaatttcattcccaccatcgagtccataaacatcagcggtgtcnnnnnnngtgatgcctttactgaatgcatgattaattacggaaatgccaatttc |
339 |
Q |
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| T |
47477695 |
caaaatttcattcccaccatcgagtccataaacatcagcggtgtcaaaaaaagtgatgcctttactgaatgcatgattaattacggaaatgccaatttc |
47477793 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 229 - 330
Target Start/End: Original strand, 47486857 - 47486958
Alignment:
| Q |
229 |
tacctttccaaccaaaatttcattcccaccatcgagtccataaacatcagcggtgtcnnnnnnngtgatgcctttactgaatgcatgattaattacggaa |
328 |
Q |
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| T |
47486857 |
tacctttccaaccaatatttcattaccaccatcgactccataaacatcagcagtatcaaataaagtgatgcctttactaaatgcatacttaattatggaa |
47486956 |
T |
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| Q |
329 |
at |
330 |
Q |
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|| |
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| T |
47486957 |
at |
47486958 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 130 - 186
Target Start/End: Complemental strand, 2097181 - 2097125
Alignment:
| Q |
130 |
ttagttagttgtgagattactatttactcgtctgtccggatttaaacccaggacctc |
186 |
Q |
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| T |
2097181 |
ttagttagttgttagattaatatttactcccttgtccgggtttgaacccaggacctc |
2097125 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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