View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13273_low_22 (Length: 319)
Name: NF13273_low_22
Description: NF13273
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13273_low_22 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 13 - 319
Target Start/End: Complemental strand, 286944 - 286638
Alignment:
| Q |
13 |
ataatacttcacttgacatggaaattgaagatagtatcaccatttataaagattaaattaacaaagctcaactcaccttgctaatgcaggtgggtcccat |
112 |
Q |
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| T |
286944 |
ataatacttcacttgacatggaaattgaagatagttacaccatttataaagattacattaacaaagctcaaatcaccttgctaatgcaggtgggtcccat |
286845 |
T |
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| Q |
113 |
gatgatggaacagcttttttaacatgatcgcaaagtagcatctgagacttctctaatgcaacagtgtaaagtgtaattaacaccccatcaaaagcaaggg |
212 |
Q |
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| T |
286844 |
gatgatggaacagcttttttaacatgatcgcaaagtagcatctgagacttctctaatgcaacagtgtaaagtgtaattaaaaccccatcaaaagcaaggg |
286745 |
T |
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| Q |
213 |
tcttggtatgagctgcatctttctgccaactcccagaaaattcaaacattgaattgaaaagcccagagggaattttgccagttaaagacaactcctgatt |
312 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| |
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| T |
286744 |
tcttggtatgagctgcatctttctgccagctcccagaaaattcaaacattgaattgaaaagtccagagggaattttgccagtcaaagacaactcctgatt |
286645 |
T |
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| Q |
313 |
gaactgc |
319 |
Q |
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||||||| |
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| T |
286644 |
gaactgc |
286638 |
T |
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