View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13273_low_23 (Length: 318)
Name: NF13273_low_23
Description: NF13273
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13273_low_23 |
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Alignment Details
Target: chr8 (Bit Score: 169; Significance: 1e-90; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 11 - 300
Target Start/End: Complemental strand, 16815947 - 16815641
Alignment:
| Q |
11 |
tgggcaatgaaaggtggatacctgcataacaattatatgaaaataattttaaaactaaacataccattagtatatgtttggatacgttgagtttaacgaa |
110 |
Q |
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| T |
16815947 |
tgggcaatgaaaggtggatacctgcataacaattatatgaaaataattttaaaactaaacataccactagtatatgtttggatacgttgagtttaacgaa |
16815848 |
T |
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| Q |
111 |
atcacaaagtatctaacaaaagcttaagtatgtgtttcttaagatttcnnnnnnnatgatgtcacctcgaggaa--------tgaaata---------cc |
193 |
Q |
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| T |
16815847 |
atcacaaggtatctaacaaaagcttaagcatgtgtttgtttgggtttctttttttatgatgtcacttcgaggaagttcatcttgaagtaatgagctacct |
16815748 |
T |
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| Q |
194 |
cgcgttgagaggtaagctacatgtttccaaacagacactatctcttgtaggtttgggttggaaattccaaacataaaaccaaacgcactattaatttgga |
293 |
Q |
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| T |
16815747 |
cgctgtgagaggtaagctacatgtttccaaacagacactatttcttgtaggtttgggttggaaattccaaacataataccaaacgcactattaatttgga |
16815648 |
T |
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| Q |
294 |
gagacga |
300 |
Q |
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| T |
16815647 |
gagacga |
16815641 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 58 - 116
Target Start/End: Complemental strand, 16815561 - 16815503
Alignment:
| Q |
58 |
tttaaaactaaacataccattagtatatgtttggatacgttgagtttaacgaaatcaca |
116 |
Q |
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| T |
16815561 |
tttaaaactaaacatactactagtacatgtttggacatgttgagtttgacgaaatcaca |
16815503 |
T |
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