View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13273_low_27 (Length: 286)
Name: NF13273_low_27
Description: NF13273
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13273_low_27 |
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Alignment Details
Target: chr3 (Bit Score: 245; Significance: 1e-136; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 12 - 267
Target Start/End: Complemental strand, 49987537 - 49987281
Alignment:
| Q |
12 |
atgaatgtgagaaaacacagcattggtgattactttatctatagacccgtcagtgagtatgattggcacctttaaaagcaccaagacaaacgtcgagatg |
111 |
Q |
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| T |
49987537 |
atgaatgtgagaaaacacagcattggtgattactttatctatagacccgtcagtgagtatgattggcacctttaaaagcaccaagacaaacatcgagatg |
49987438 |
T |
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| Q |
112 |
ttagacttcttatgatggcggttatgggcagttgtgtttttatgtgtcagttatgtatagcagttatgggttatgtgttttctatttttgaataaatata |
211 |
Q |
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| T |
49987437 |
ttagacttcttatgatggcggttatgggcagttgtgtttttatgtgtcagttatgtatagcagttatgggttatgtgttttctatttttgaataaatata |
49987338 |
T |
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| Q |
212 |
gatagaaaaggaggaagtgatgatgggata-ttttctaaatggttttgggtgggaga |
267 |
Q |
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| T |
49987337 |
gatagaaaaggaggaagtgatgatgggatatttttctaaatggttttgggtgggaga |
49987281 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 110 - 244
Target Start/End: Complemental strand, 16773037 - 16772903
Alignment:
| Q |
110 |
tgttagacttcttatgatggcggttatgggcagttgtgtttttatgtgtcagttatgtatagcagttatgggttatgtgt-tttctatttttgaataaat |
208 |
Q |
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| T |
16773037 |
tgttagacttcttatgatggcggttatgggcagttttgcttttatgtgtcagttatgtttagcagttatgggttatgtgtgtttct-gtttagaataaat |
16772939 |
T |
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| Q |
209 |
atagatagaaaaggaggaagtgatgatgggatattt |
244 |
Q |
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| T |
16772938 |
atagatagaaaaggagaaagtgattatgggatattt |
16772903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 155 - 267
Target Start/End: Complemental strand, 44260951 - 44260839
Alignment:
| Q |
155 |
gtgtcagttatgtatagcagttatgggttatgtgt-tttctatttttgaataaatatagatagaaaaggaggaagtgatgatgggatattttctaaatgg |
253 |
Q |
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||||||||||||||||||| ||||||||||||||| ||||| |||| ||||||||||||| | ||||||| | |||| |||||||| ||| | ||||| |
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| T |
44260951 |
gtgtcagttatgtatagcaattatgggttatgtgtgtttctgttttagaataaatatagaaaagaaaggagaacatgattatgggatagttt-tgaatgg |
44260853 |
T |
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| Q |
254 |
ttttgggtgggaga |
267 |
Q |
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| T |
44260852 |
ttttgggagggaga |
44260839 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 54; Significance: 5e-22; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 114 - 258
Target Start/End: Original strand, 20936451 - 20936597
Alignment:
| Q |
114 |
agacttcttatgatggcggttatgggcagttgtgtttttat---gtgtcagttatgtatagcagttatgggttatgtgttttctatttttgaataaatat |
210 |
Q |
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| T |
20936451 |
agacttcttatgatggcgggtatgggctgttatgtttttattatgtgtcagttatgtatagaagttatgggttgtgtg-tttctgttttagaaaaaatat |
20936549 |
T |
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| Q |
211 |
agatagaaaaggaggaagtgatgatgggatattttctaaatggttttg |
258 |
Q |
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| T |
20936550 |
agaaaggaaagaagaaaattatcatgggatagtttttgaatggttttg |
20936597 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 110 - 240
Target Start/End: Original strand, 24060330 - 24060461
Alignment:
| Q |
110 |
tgttagacttcttatgatggcggttatgggcagttgtgttt---ttatgtgtcagttatgtatagcagttatgggttatgtgt-tttctatttttgaata |
205 |
Q |
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||||||||||||||||| |||||||||||| |||| |||| |||||||||| ||| |||||||||||||||||||||||| ||||| |||| ||||| |
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| T |
24060330 |
tgttagacttcttatgacggcggttatgggaagttaggtttttattatgtgtcaatta-gtatagcagttatgggttatgtgtgtttctgttttagaata |
24060428 |
T |
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| Q |
206 |
aatatagatagaaaaggaggaagtgatgatgggat |
240 |
Q |
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| T |
24060429 |
a--atagacaggaaaggagaaagtgattatgggat |
24060461 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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