View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13273_low_3 (Length: 583)
Name: NF13273_low_3
Description: NF13273
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13273_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 507; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 507; E-Value: 0
Query Start/End: Original strand, 1 - 574
Target Start/End: Original strand, 48542916 - 48543477
Alignment:
| Q |
1 |
tgtcttacaatttgaacaaagggtatgtccattgtgacactgcaaaacaaatttgatttaatttttaagaattagtcatcatgttgtagacatgataaat |
100 |
Q |
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| T |
48542916 |
tgtcttacaatttgaacaaagggtatgtccattgtgacactgcaaaacaaatttgattt-----ttaagaattagtcatcatgttgtagacatgattaat |
48543010 |
T |
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| Q |
101 |
caaatttttctagttttactgtatttcttgtacaaggacaagaatgtcctttggtttaatggaacatttgtattctattatgatctccttggtttcaatt |
200 |
Q |
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| T |
48543011 |
caaatttttctagttt-actgtatttcttgtacaaggacaagaatgtcctttggtttaatggaacatttgtattctattatgatctccttggtttcaatt |
48543109 |
T |
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| Q |
201 |
gtgattaacttgttatatagaactaaaatataccactttttaaatctctcaagtggtataggttgtgaagctgaagaaggaggtttgatccctaccatta |
300 |
Q |
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| T |
48543110 |
gtgattaacttgttatatagaactaaaatataccactttttaaatctctcaagtggtataggttgtgaagctgaagaaggaggtttgatccctaccatta |
48543209 |
T |
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| Q |
301 |
acaaattatctctacttttgagggctgcaacaaactaaactaatcaactaacatttgccaagaaaaagagaaacgaaaaccgtaaaaagatagcagtaat |
400 |
Q |
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| T |
48543210 |
acaaattatctctacttttgagggctgcaacaaactaatc------actaacatttgccaagaaaaagagaaacgaaaaccgtaaaaagatagcagtaat |
48543303 |
T |
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| Q |
401 |
tatctaaacatagacttgcaacatacatggatgatattcagataacaaacctgatggattggagggtacattgaattggtgcaaaccggacattcaagaa |
500 |
Q |
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| T |
48543304 |
tatctaaacatagacttgcaacatacatggatgatattcagataacaaacctgatggattggagggtacattgaattggtgcaaaccggacattcaagaa |
48543403 |
T |
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| Q |
501 |
gatcatggacaccggtagtggtgggagaattgttgagtagctttgagattgaagaaaactgatggtgatgatgt |
574 |
Q |
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| T |
48543404 |
gatcatggacactggtagtggtgggagcattgttgagtagctttgagattgaagaaaactgatggtgatgatgt |
48543477 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 446 - 512
Target Start/End: Complemental strand, 9834231 - 9834165
Alignment:
| Q |
446 |
caaacctgatggattggagggtacattgaattggtgcaaaccggacattcaagaagatcatggacac |
512 |
Q |
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| T |
9834231 |
caaacctgatgaattggagggtacattgaattagtacaaacaggacattcaagaagctcatgaacac |
9834165 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 2 - 47
Target Start/End: Complemental strand, 9836293 - 9836248
Alignment:
| Q |
2 |
gtcttacaatttgaacaaagggtatgtccattgtgacactgcaaaa |
47 |
Q |
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| T |
9836293 |
gtcttacaagttgaacatagggtatgcccattgtgacactgcaaaa |
9836248 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 446 - 495
Target Start/End: Complemental strand, 733108 - 733059
Alignment:
| Q |
446 |
caaacctgatggattggagggtacattgaattggtgcaaaccggacattc |
495 |
Q |
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| T |
733108 |
caaacctgatgaattggaggatacattgaattggtacaaacaggacattc |
733059 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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