View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13273_low_31 (Length: 266)
Name: NF13273_low_31
Description: NF13273
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13273_low_31 |
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Alignment Details
Target: chr1 (Bit Score: 256; Significance: 1e-142; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 2 - 257
Target Start/End: Complemental strand, 33518361 - 33518106
Alignment:
| Q |
2 |
gggtgttgtcgttatgtataaaataaaacactatactaatgttactgaatcaaaagtgcccttaattaaggagagacaaagagagaagcattaaattacc |
101 |
Q |
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| T |
33518361 |
gggtgttgtcgttatgtataaaataaaacactatactaatgttactgaatcaaaagtgcccttaattaaggagagacaaagagagaagcattaaattacc |
33518262 |
T |
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| Q |
102 |
gacaagaaaagtgaccatatgagaatctttatgttgttggggtcttaaaaacttcattgcctttttcctgtcattgttggcgaagtgctttgtgaatatg |
201 |
Q |
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| T |
33518261 |
gacaagaaaagtgaccatatgagaatctttatgttgttggggtcttaaaaacttcattgcctttttcctgtcattgttggcgaagtgctttgtgaatatg |
33518162 |
T |
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| Q |
202 |
gattccacttcgtccatttgtctaagaacctaataatataaattaacaagtattat |
257 |
Q |
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| T |
33518161 |
gattccacttcgtccatttgtctaagaacctaataatataaattaacaagtattat |
33518106 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 96 - 232
Target Start/End: Original strand, 15640737 - 15640873
Alignment:
| Q |
96 |
attaccgacaagaaaagtgaccatatgagaatctttatgttgttggggtcttaaaaacttcattgcctttttcctgtcattgttggcgaagtgctttgtg |
195 |
Q |
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| T |
15640737 |
attaccgacaaagaaggtgaccatatgagaacctttctgcacttgaggttttaaaaacttcattgccttttttctatcattgctagcaaagtgctttgtg |
15640836 |
T |
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| Q |
196 |
aatatggattccacttcgtccatttgtctaagaacct |
232 |
Q |
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| T |
15640837 |
aatatggattccacttcatccattagtctaacaacct |
15640873 |
T |
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