View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13273_low_35 (Length: 246)
Name: NF13273_low_35
Description: NF13273
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13273_low_35 |
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| [»] chr4 (4 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 230; Significance: 1e-127; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 17 - 246
Target Start/End: Original strand, 52071360 - 52071589
Alignment:
| Q |
17 |
aataataccttagagcacttggtagcttttgtacgaacaacatgtgagtttggcaccattggtttaggattgttctgtttatgtgcgatctttgcatttt |
116 |
Q |
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| T |
52071360 |
aataataccttagagcacttggtagcttttgtacgaacaacatgtgagtttggcaccattggtttaggattgttctgtttatgtgcgatctttgcatttt |
52071459 |
T |
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| Q |
117 |
ttggagtagagttgttggtgttttgttgttggagatctttaaccttttttcctaaattcgtgttccaataattcttgatttcattgtctgttcgccctgg |
216 |
Q |
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| T |
52071460 |
ttggagtagagttgttggtgttttgttgttggagatctttaaccttttttcctaaattcgtgttccaataattcttgatttcattgtctgttcgccctgg |
52071559 |
T |
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| Q |
217 |
tagtcttccagctattagagaccatctacc |
246 |
Q |
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| T |
52071560 |
tagtcttccagctattagagaccatctacc |
52071589 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 179 - 240
Target Start/End: Complemental strand, 41544695 - 41544634
Alignment:
| Q |
179 |
ttccaataattcttgatttcattgtctgttcgccctggtagtcttccagctattagagacca |
240 |
Q |
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| T |
41544695 |
ttccaatagttcttaatttcattgtctgttcgccctggaagtcttcccgctatcaaagacca |
41544634 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 176 - 244
Target Start/End: Complemental strand, 27808608 - 27808540
Alignment:
| Q |
176 |
gtgttccaataattcttgatttcattgtctgttcgccctggtagtcttccagctattagagaccatcta |
244 |
Q |
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| T |
27808608 |
gtgttccaataattctttatctcattatctgttcttcctggtaatcttccagctatcaaagaccatcta |
27808540 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 176 - 219
Target Start/End: Complemental strand, 36246581 - 36246538
Alignment:
| Q |
176 |
gtgttccaataattcttgatttcattgtctgttcgccctggtag |
219 |
Q |
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| T |
36246581 |
gtgttccaataattcttgatttcattgtctgttcttcctggtag |
36246538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 176 - 244
Target Start/End: Complemental strand, 9622130 - 9622062
Alignment:
| Q |
176 |
gtgttccaataattcttgatttcattgtctgttcgccctggtagtcttccagctattagagaccatcta |
244 |
Q |
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| T |
9622130 |
gtgttccagtagttctttatttcattgtctgttcgtcctggtaatcttccggctataagtgaccatcta |
9622062 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 179 - 244
Target Start/End: Complemental strand, 7195739 - 7195674
Alignment:
| Q |
179 |
ttccaataattcttgatttcattgtctgttcgccctggtagtcttccagctattagagaccatcta |
244 |
Q |
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||||| || ||||||||||||||||||||||| ||||||||||| |||||| | |||||||||| |
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| T |
7195739 |
ttccagtagttcttgatttcattgtctgttcgtcctggtagtctcttagctatcaaagaccatcta |
7195674 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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