View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13273_low_39 (Length: 232)
Name: NF13273_low_39
Description: NF13273
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13273_low_39 |
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Alignment Details
Target: chr7 (Bit Score: 107; Significance: 9e-54; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 110 - 220
Target Start/End: Complemental strand, 47478025 - 47477915
Alignment:
| Q |
110 |
tgaactaattcctcatgtctcacttggaacccaaggctttcaggtatcatcacttcactcacttgtacacttacacttacatatacaattgtcatttata |
209 |
Q |
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| T |
47478025 |
tgaactaattcctcatgtctcacttggaacccaaggctttcaggtatcatcacttcactcacttgtacacttacacttacatatacaaatgtcatttata |
47477926 |
T |
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| Q |
210 |
ttcttctctct |
220 |
Q |
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| T |
47477925 |
ttcttctctct |
47477915 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 19 - 77
Target Start/End: Complemental strand, 47478110 - 47478052
Alignment:
| Q |
19 |
atatatcactgcaaaatgcaaattggaactgaagcaattactattgaacaaccaaaatg |
77 |
Q |
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| T |
47478110 |
atatatcactgcaaaatgcaaattggaactgaagcaattactattgaacaaccaaaatg |
47478052 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 114 - 154
Target Start/End: Complemental strand, 47487069 - 47487029
Alignment:
| Q |
114 |
ctaattcctcatgtctcacttggaacccaaggctttcaggt |
154 |
Q |
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| T |
47487069 |
ctaattcctcatgttacacttggaacccaaggctttcaggt |
47487029 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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