View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13273_low_40 (Length: 230)
Name: NF13273_low_40
Description: NF13273
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13273_low_40 |
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Alignment Details
Target: chr4 (Bit Score: 189; Significance: 1e-102; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 19 - 215
Target Start/End: Complemental strand, 27638634 - 27638438
Alignment:
| Q |
19 |
tccctactatgaagaaccatccttaaaacatttagatttaatcaaatcttgtttatgaatttgtttcatcaaagttggttctgaaataatggccatgcaa |
118 |
Q |
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| T |
27638634 |
tccctactacgaagaaccatccttaaaacatttagatttaatcaaatcttgtttatgaatttgtttcatcaaggttggttctgaaataatggccatgcaa |
27638535 |
T |
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| Q |
119 |
ccaccctctcacggaaataatgtatttcctttctatgtcaatgacctttacttaggtggactcgtagagttacaacaacttcaacctccacaatatt |
215 |
Q |
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| T |
27638534 |
ccaccctctcacggaaataatgtatttcctttctatgtcaatgacctttacttaggtggactcgtagagttacaacaacttcaacctccacaatatt |
27638438 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 19 - 214
Target Start/End: Complemental strand, 37354818 - 37354623
Alignment:
| Q |
19 |
tccctactatgaagaaccatccttaaaacatttagatttaatcaaatcttgtttatgaatttgtttcatcaaagttggttctgaaataatggccatgcaa |
118 |
Q |
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| T |
37354818 |
tccctactatgaagaaccacccttaaaacattt-gattttatcaaatctaatttatgcatttgtttcttcaaggttggctctgaaatagtggccatgcaa |
37354720 |
T |
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| Q |
119 |
ccaccctctcacggaaa-taatgtatttcctttctatgtcaatgacctttacttaggtggactcgtagagttacaacaacttcaacctccacaatat |
214 |
Q |
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| T |
37354719 |
tcacccactcacggaaaataatgtatttcctttttatgtcaatgacctttacttaggtggactcgcagagttacaacaacttcaacctccacgatat |
37354623 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 19 - 214
Target Start/End: Complemental strand, 37366792 - 37366597
Alignment:
| Q |
19 |
tccctactatgaagaaccatccttaaaacatttagatttaatcaaatcttgtttatgaatttgtttcatcaaagttggttctgaaataatggccatgcaa |
118 |
Q |
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||||||||||||||||||| ||||||||||||| ||||| ||||||||| |||||| ||||||||| |||| ||||| ||||||||| ||||||||||| |
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| T |
37366792 |
tccctactatgaagaaccacccttaaaacattt-gattttatcaaatctaatttatgcatttgtttcttcaaggttggctctgaaatagtggccatgcaa |
37366694 |
T |
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| Q |
119 |
ccaccctctcacggaaa-taatgtatttcctttctatgtcaatgacctttacttaggtggactcgtagagttacaacaacttcaacctccacaatat |
214 |
Q |
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| T |
37366693 |
tcacccactcacggaaaataatgtatttcctttttatgtcaatgacctttacttaggtggactcgcagagttacaacaacttcaacctccacgatat |
37366597 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 214
Target Start/End: Complemental strand, 27912484 - 27912444
Alignment:
| Q |
174 |
gtggactcgtagagttacaacaacttcaacctccacaatat |
214 |
Q |
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| T |
27912484 |
gtggactcgtagagttacaacaatctcaacatccacaatat |
27912444 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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