View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13273_low_5 (Length: 553)
Name: NF13273_low_5
Description: NF13273
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13273_low_5 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 267; Significance: 1e-149; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 10 - 324
Target Start/End: Original strand, 45722200 - 45722514
Alignment:
| Q |
10 |
aagaatatctaaggatgttccgtaactttgaggaatttgttgactcatgtaaagagtacgtgactccaagtttcaatctcttaataaaaattctaaatga |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45722200 |
aagaatatctaaggatgttccgtaactttgaggaatttgttgactcatgtaa-gagtacgtgactccaagtttcaatctcttaataaaaattctaaatga |
45722298 |
T |
|
| Q |
110 |
acgtgatctccatt-----actcataatattcaaatataatttgcttttaatctactagtagtgagtacaactttactattttgatataaataaattatt |
204 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||| |
|
|
| T |
45722299 |
acgtgatctccattccattactcataatattcaaatataatttgcttttaatctactagtagtgagtacaacttcactattttgatataa----attatt |
45722394 |
T |
|
| Q |
205 |
cctacatgcgtgtggaagccattaaagaattcatatcaattgtcaatattgtcaactcttgtccatcatccaaaatcttgatgctatgcacgttcaacat |
304 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45722395 |
cctacatgcgtgtggaagccattaaagaattcatatcaattgtcaatattgtcaactcttgtccatcatccaaaatcttgatgctatgcacgttcaacat |
45722494 |
T |
|
| Q |
305 |
tagtcccgcaacacactaag |
324 |
Q |
| |
|
||||||| |||||||||||| |
|
|
| T |
45722495 |
tagtcccacaacacactaag |
45722514 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 468 - 535
Target Start/End: Original strand, 45722684 - 45722751
Alignment:
| Q |
468 |
tatatatatagacacataatttgagcttgagtgctttagaatcaattaatcaaagacatggttagacc |
535 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45722684 |
tatatatatagacacataatttgagcttgagtgctttagaatcaattaatcaaagacatggttagacc |
45722751 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 385 - 471
Target Start/End: Original strand, 45722575 - 45722653
Alignment:
| Q |
385 |
gtccaaagtcaagggtgtgagttgtgatgtgagtgtcacaatgaagctggccttcttcttcaattctgttccccaaatgcatgtata |
471 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| ||||||||||||||||||||| |
|
|
| T |
45722575 |
gtccaaagtcaagggtgtgagttgtg-----agtgtcacaatgaagctggc---cttcttcaattatgttccccaaatgcatgtata |
45722653 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University