View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13273_low_7 (Length: 505)
Name: NF13273_low_7
Description: NF13273
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13273_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 457; Significance: 0; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 457; E-Value: 0
Query Start/End: Original strand, 23 - 491
Target Start/End: Original strand, 36079605 - 36080073
Alignment:
| Q |
23 |
ccccttgagaactttttccaatgtctttcaaaccattctccaccttcatatcctgcatccaacgccatttacactccaaaaaactcctcattcttatcca |
122 |
Q |
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| T |
36079605 |
ccccttgagaactttttccaatgtctttcaaaccattctccaccttcatatcctgcatccaacgccatttacactccaaaaaactcctcattcttatcca |
36079704 |
T |
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| Q |
123 |
tcttacacatgcacacatacaacaacagattttcatcaccaacagcaccaaaacctcttgcaattgtaacatccctgcatgtgtcacacgtgcaaggaac |
222 |
Q |
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| T |
36079705 |
tcttacacatgcacacatacaacaacagattttcatcacgaacagcaccaaaacctcttgcaattgtaacatccctgcatgtgtcacacgtgcaaggaac |
36079804 |
T |
|
| Q |
223 |
aattatatgtgcaaaagaatatgatcttcaaattagaatccgaagcggtggccatgattgtgaaggcctttcatatgtatcagatgttccttttattata |
322 |
Q |
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| T |
36079805 |
aattatatgtgcaaaaaaatatgatcttcaaattagaatccgaagcggtggccatgattgtgaaggcctttcatatgtatcagatgttccttttattata |
36079904 |
T |
|
| Q |
323 |
cttgacatgtttcatcatgattcagttgatattgacgttgaaaacggaacagcatgggttgaagcaggtgcaacacttggtaaggtttattatcacattg |
422 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
36079905 |
cttgacatgtttcatcatgattcagttgatattgacgttgaaaacggaacagcatgggttgaagcaggtgcaacacttggtaaggtttattattacattg |
36080004 |
T |
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| Q |
423 |
caaagaagagtcaagttcatgcttttccagctggggtgtgtcctacagtagctactggtggtcattttt |
491 |
Q |
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| T |
36080005 |
caaagaagagtcaagttcatgcttttccagctggggtgtgtcctacagtagctactggtggtcattttt |
36080073 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 249 - 426
Target Start/End: Original strand, 36107695 - 36107872
Alignment:
| Q |
249 |
ttcaaattagaatccgaagcggtggccatgattgtgaaggcctttcatatgtatcagatgttccttttattatacttgacatgtttcatcatgattcagt |
348 |
Q |
| |
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|||| |||||||| ||||| || || || || | |||||| ||||||||||||||||||| |||||||||||||||||||||||||||| ||||||| |
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| T |
36107695 |
ttcagattagaattcgaagtggcggtcacgactatgaaggtttttcatatgtatcagatgtgccttttattatacttgacatgtttcatctcaattcagt |
36107794 |
T |
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| Q |
349 |
tgatattgacgttgaaaacggaacagcatgggttgaagcaggtgcaacacttggtaaggtttattatcacattgcaaa |
426 |
Q |
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| T |
36107795 |
tgatatcaatttacaagaatcaacagcatgggttgaatcaggtgcaacacttggtaagatttattataacattgcaaa |
36107872 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 257 - 429
Target Start/End: Original strand, 21482435 - 21482607
Alignment:
| Q |
257 |
agaatccgaagcggtggccatgattgtgaaggcctttcatatgtatcagatgttccttttattatacttgacatgtttcatcatgattcagttgatattg |
356 |
Q |
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| T |
21482435 |
agaatccgaagtggcggccacgactttgaaggtttctcatatgtatcagacgtgccttttgttataattgacttgcttcatctcaattcagttgatgtca |
21482534 |
T |
|
| Q |
357 |
acgttgaaaacggaacagcatgggttgaagcaggtgcaacacttggtaaggtttattatcacattgcaaagaa |
429 |
Q |
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| T |
21482535 |
atttacaagaagaaacagcatgggttgaatcaggtgcaacacttggaaagctttattataccattggaaagaa |
21482607 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 293 - 415
Target Start/End: Complemental strand, 34971906 - 34971784
Alignment:
| Q |
293 |
tcatatgtatcagatgttccttttattatacttgacatgtttcatcatgattcagttgatattgacgttgaaaacggaacagcatgggttgaagcaggtg |
392 |
Q |
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|||||| |||||||||| ||||||||| |||||||||||||||| | ||||||||||| | | | || | |||| ||||||||||| |||||| |
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| T |
34971906 |
tcatatttatcagatgtgccttttattgtacttgacatgtttcacctcaattcagttgatgtcaatttacaagaatcaacaacatgggttgaatcaggtg |
34971807 |
T |
|
| Q |
393 |
caacacttggtaaggtttattat |
415 |
Q |
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|||||||||||||| |||||||| |
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| T |
34971806 |
caacacttggtaagatttattat |
34971784 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 370 - 429
Target Start/End: Original strand, 36100557 - 36100616
Alignment:
| Q |
370 |
aacagcatgggttgaagcaggtgcaacacttggtaaggtttattatcacattgcaaagaa |
429 |
Q |
| |
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|||| ||||||||||||| |||||||||||||||||| |||||||| |||| ||||||| |
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| T |
36100557 |
aacaacatgggttgaagctggtgcaacacttggtaagatttattataccatttcaaagaa |
36100616 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 374 - 415
Target Start/End: Complemental strand, 36090515 - 36090474
Alignment:
| Q |
374 |
gcatgggttgaagcaggtgcaacacttggtaaggtttattat |
415 |
Q |
| |
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|||||||||||| ||||||||| |||||||||| |||||||| |
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| T |
36090515 |
gcatgggttgaatcaggtgcaatacttggtaagatttattat |
36090474 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 249 - 429
Target Start/End: Original strand, 6838456 - 6838636
Alignment:
| Q |
249 |
ttcaaattagaatccgaagcggtggccatgattgtgaaggcctttcatatgtatcagatgttccttttattatacttgacatgtttcatcatgattcagt |
348 |
Q |
| |
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|||| |||||||| ||||| ||||| || || | |||||| |||||||||||||||||| |||||| ||||||||||||||||||||| |||| || |
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| T |
6838456 |
ttcagattagaattcgaagtggtggtcacgactatgaaggttgttcatatgtatcagatgtgccttttgttatacttgacatgtttcatctcaattctgt |
6838555 |
T |
|
| Q |
349 |
tgatattgacgttgaaaacggaacagcatgggttgaagcaggtgcaacacttggtaaggtttattatcacattgcaaagaa |
429 |
Q |
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| T |
6838556 |
tgatgtcaatttacaagaatcaacagcatgggttgaatcaggtgcaacacttggtaagatttattataccattgcaaagaa |
6838636 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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